Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0507
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       57   5e-09
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       34   0.056
SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.39 
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)                   29   1.2  
SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)                29   2.1  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       27   4.8  
SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 27   8.5  
SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019)                   27   8.5  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 26/66 (39%), Positives = 44/66 (66%)
 Frame = -2

Query: 422 VETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDE 243
           V+ L ++ E +K+D+  KDL  +L+ETA L SG+ + +    A RI RM++L +G+D +E
Sbjct: 679 VKQLLKRVEENKDDQTAKDLSRILFETATLRSGYLVKDSADFAGRIERMLRLSMGVDLEE 738

Query: 242 PIQVEE 225
            ++ EE
Sbjct: 739 KVEPEE 744


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 33.9 bits (74), Expect = 0.056
 Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 2/21 (9%)
 Frame = -2

Query: 212 DVPPLEGDA--DDASRMEEVD 156
           D+PPLEGD   DDAS+MEEVD
Sbjct: 561 DMPPLEGDDANDDASKMEEVD 581


>SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 260 GIDEDEPIQVEEPASGDV-PPLEGDADDAS 174
           GIDED P  V++ ASGD      GD DDA+
Sbjct: 54  GIDEDAPGVVDDAASGDTEDAAPGDMDDAA 83



 Score = 31.1 bits (67), Expect = 0.39
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 260 GIDEDEPIQVEEPASGDV-PPLEGDADDAS 174
           GIDED P  V++ ASGD      GD DDA+
Sbjct: 358 GIDEDAPGVVDDAASGDTEDAAPGDMDDAA 387



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 257 IDEDEPIQVEEPASGDVPPLE-GDADDAS 174
           IDED P  V++ ASGD      GD DDA+
Sbjct: 111 IDEDAPGVVDDAASGDTDDAALGDTDDAA 139


>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
          Length = 709

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 317 LDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 156
           L E QVH   +  +   G  + +DE  + ++   GD    +G+ +DA   +EVD
Sbjct: 437 LQEKQVHVQNLKTLRDAGHEVSDDEDEEGDDHEEGDEEDDDGEEEDA--QDEVD 488


>SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)
          Length = 770

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 254 DEDEPIQVEEPASGDVPPLEGDADDASRMEE 162
           D+D+    +E A+GD PP EG   + SR EE
Sbjct: 519 DDDDDEYPDEGANGDRPPEEGYYGNESRPEE 549


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 254 DEDEPIQVEEPASGDVPPLEGDADDASRMEEVD*DLYFNC 135
           D+D  I  ++    D    +GD DD    +E D D Y+ C
Sbjct: 465 DDDNDISDDDDDDDDDDDDDGDDDDEDDDDEDDDDYYYTC 504


>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 60  NGIFELNQSLAVHRCTKTNHYDMVPTVKVEILINLLHA-RCIIGITLQWRHISRSRLFNL 236
           NG+  +N  L+++R    N   ++ ++   + INLL +   ++ I    R +S SRL ++
Sbjct: 348 NGLLSINCLLSINRLLSIN---LLLSINRLLSINLLLSINRLLSIN---RLLSISRLLSI 401

Query: 237 NRLIFIN 257
           NRL+ IN
Sbjct: 402 NRLLSIN 408



 Score = 27.1 bits (57), Expect = 6.4
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 60  NGIFELNQSLAVHRCTKTN---HYDMVPTVKVEILIN-LLHARCIIGITLQWRHISRSRL 227
           N +  +N+ L+++     N     +++ T+ + + IN LL    ++ I    R +S SRL
Sbjct: 693 NRLLSINRLLSINCLLSINCLLSINLLLTINLLLTINRLLSINRLLSID---RLLSISRL 749

Query: 228 FNLNRLIFINT 260
             +NRL+ INT
Sbjct: 750 LTINRLLSINT 760


>SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +3

Query: 207 HISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL-----GLIKREARRQQGSFIQ*DNKIL 371
           H+  + L N+     +++ T     I   S D       L++R    + G+ ++  N+IL
Sbjct: 53  HVGTNDLRNMEPQQIVDSITDIGRGIQANSPDTDVVISALLQRCDSHEFGAKVKETNRIL 112

Query: 372 NSFVILVGFRFLP 410
            SF    G+ FLP
Sbjct: 113 RSFANQNGWSFLP 125


>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 338  LLSSGFTLDEPQVHASRIYR-MIKLGLGIDEDEPIQVEEP 222
            LL SGF  D+ + H S + + MIK+    +E  P+ V EP
Sbjct: 931  LLKSGFKFDD-EAHKSMLMQIMIKVSDVSNEARPMDVAEP 969


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +3

Query: 150 ILINLLHARCIIGITLQWRHISR-SRLFNLN-RLIFINTKTQFDHSIDTGSMDLGLIKRE 323
           +LINL  A  I+G+TL  R I   ++L NLN + I+I     +   I  GS+ L L+   
Sbjct: 45  LLINLTVADFIVGLTLGGRSIHELTKLINLNDQHIYIGEFINYTFLI--GSV-LSLMVIA 101

Query: 324 ARRQQGSFIQ*DNKILNSFVILVGFRFL 407
             R   + +   +++L +    +G   +
Sbjct: 102 MERAYAALVPFRHRLLKNKTYFIGIALI 129


>SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019)
          Length = 248

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 135 TVKVEILINLLHARCIIGITLQWRHI-----SRSRLFNLNRLIFINTKTQFDHSIDTGSM 299
           T +V +L++L+ A C++GIT     +       +R F +N  I ++  TQFD      SM
Sbjct: 49  TRRVHLLMSLVFADCLVGITAIGYAVIVARKKATRAF-VNGSIQLSKFTQFDSFTAFASM 107

Query: 300 DLGLI 314
            LGL+
Sbjct: 108 -LGLV 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,987
Number of Sequences: 59808
Number of extensions: 217873
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)