Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0503
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.6  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   8.7  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 447 RLYNNLEPNSPLRYHVYYHVIELAARV 527
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 584 VSKLFPKLLNPSEDFPDKSNSCSQFYDMIIY 492
           + KLF   LN S D PD +    QFY++  Y
Sbjct: 656 MGKLFQVELNFSYDSPDVNLLIEQFYEITSY 686


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +3

Query: 171 ELRRYFKSLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEPSESDIEAILNS 323
           EL  Y   L   +IS +K+P+      +E+DL +++ + +   +E  E+D     NS
Sbjct: 4   ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,365
Number of Sequences: 5004
Number of extensions: 44641
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)