Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0501
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 34 0.062
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 32 0.25
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 32 0.25
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 31 0.44
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 1.8
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 29 3.1
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 3.1
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 3.1
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 29 3.1
AC006661-2|AAK31542.1| 253|Caenorhabditis elegans Spliceosome-a... 29 3.1
U97017-7|AAB52357.1| 130|Caenorhabditis elegans Hypothetical pr... 28 4.1
U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.4
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 5.4
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 5.4
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 5.4
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 27 7.1
AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical... 27 7.1
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 7.1
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 27 7.1
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 7.1
Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 27 9.4
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 27 9.4
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 27 9.4
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 34.3 bits (75), Expect = 0.062
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 413 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 550
Q+ + + + + + + F G++DLY+++L N + ++ P FAN
Sbjct: 331 QIQAIVLNKNRLSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFAN 376
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 407 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 544
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
Score = 31.1 bits (67), Expect = 0.58
Identities = 28/117 (23%), Positives = 52/117 (44%)
Frame = +2
Query: 212 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 391
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 392 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
L + ++++++ I I +F + L + LS N ++ L F NN KL
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNNLKL 118
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 401 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
LGLH + T+ + + I + + F G+ L + L+ N L + TF + KL
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTFDHVPKL 385
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 407 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 544
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
Score = 31.1 bits (67), Expect = 0.58
Identities = 28/117 (23%), Positives = 52/117 (44%)
Frame = +2
Query: 212 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 391
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 392 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
L + ++++++ I I +F + L + LS N ++ L F NN KL
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNNLKL 118
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 401 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
LGLH + T+ + + I + + F G+ L + L+ N L + TF + KL
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTFDHVPKL 385
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 404 GLHQVATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLHPETFANNK 556
GL + + + N++I I F ++ LY +NL +N + S+H TF N K
Sbjct: 97 GLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQNVK 148
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/58 (24%), Positives = 33/58 (56%)
Frame = +2
Query: 389 MFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
MF ++ ++ + ++ I I+ +F + +L + LS+NN++++ TF+N + L
Sbjct: 433 MFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMTFSNLRNL 490
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 407 LHQVATVKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHP 535
L Q+ + + ++ I Y+ NAF H L ++LS NNL ++HP
Sbjct: 131 LKQLKILSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHP 176
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 416 VATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANN 553
+ ++ I N+ I + AF G + + L NN L+S HP TF N
Sbjct: 61 IDSLTISNTPIEKMPGYAFQGFQ-IKKLFLRNNGLRSFHPNTFTGN 105
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 404 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
G+ + + + N + I AF G++ L + LSNNNL+++ F+ K L
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENIDWTIFSALKNL 249
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 404 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
G+ + + + N + I AF G++ L + LSNNNL+++ F+ K L
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENIDWTIFSALKNL 249
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 239 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 415
P C C +S+ C+ ++ T I V D + +N D + L +
Sbjct: 27 PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80
Query: 416 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSL 529
+ T+ I+NST+ +P A+ V + + ++ N LK++
Sbjct: 81 LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV 119
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 317 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 490
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 491 YAVNLSNNNLKSLH 532
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 317 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 490
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 491 YAVNLSNNNLKSLH 532
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 463 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 549
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 463 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 549
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 425 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 535
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 463 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 549
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 463 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 549
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 425 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 535
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AC006661-2|AAK31542.1| 253|Caenorhabditis elegans
Spliceosome-associated proteinprotein 1 protein.
Length = 253
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 422 TVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP-ETFANNKKL 562
T+ + N+ I YIAP+ + +L + L+NNN+ L E A KKL
Sbjct: 68 TLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKL 115
>U97017-7|AAB52357.1| 130|Caenorhabditis elegans Hypothetical
protein F47B3.2 protein.
Length = 130
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 4 EAINYQRKAIV*SCSSSLRHGGKVPGVTTAPGSMRAGI 117
EA+NY +V CS+ + G + G++ M GI
Sbjct: 8 EAVNYDTNPVVVHCSAGVGRSGTIVGISLIMDKMIQGI 45
>U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical
protein F47B3.7 protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 4 EAINYQRKAIV*SCSSSLRHGGKVPGVTTAPGSMRAGI 117
EA+NY +V CS+ + G + G++ M GI
Sbjct: 252 EAVNYDTNPVVVHCSAGVGRSGTIVGISLIMDKMIQGI 289
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 404 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLL 565
GL + + + + I I AF + L VNL N + S+ +TFAN K L
Sbjct: 130 GLRVLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSL 183
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 404 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLL 565
GL + + + + I I AF + L VNL N + S+ +TFAN K L
Sbjct: 130 GLRVLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSL 183
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 412 PGCYCKNREQHDWLYRPQCFPWCP 483
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 352 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 200
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 393 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 271
NM R+I G FST P F + + H+ C+Y
Sbjct: 93 NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133
>AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical
protein Y75B8A.5 protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 407 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 562
L + + I +S + IAP+AF G+ + + L L ++ FAN + L
Sbjct: 233 LSHTSHLLIEHSKVPSIAPDAFSGLTTIQVIELHACQLGTISARAFANVENL 284
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 400 TRTSPGCYCKNREQHDWLY 456
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 350 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 237
+R R R YRF C L+ +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 400 TRTSPGCYCKNREQHDWLY 456
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical
protein T08G3.6 protein.
Length = 304
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 75 PGSYYCSWQHARWYSANLSIKPSR 146
P + Y SW++ RW +A +KP R
Sbjct: 234 PCNEYTSWKYYRWTNAVRYVKPGR 257
>Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical
protein F53A2.9 protein.
Length = 425
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Frame = +2
Query: 293 FLEIGTQKFGDDILDLVVENADP---------RYPINLDDFMFKKLGLHQVATVKIVNST 445
++E + F D L + VEN P Y + KKL +H ++ +N+
Sbjct: 152 YIEYWLRNFQIDTLRIKVENLIPGKENSIQQSNYTGEIPPLKLKKLIIHGANNIRFINNW 211
Query: 446 IGYIAPNAFHGVHD 487
+ + PNA + D
Sbjct: 212 LDNLVPNAIDPLDD 225
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 284 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 135
W +C + + ACPR P + P I+ +RLCL RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 284 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 135
W +C + + ACPR P + P I+ +RLCL RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 284 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 135
W +C + + ACPR P + P I+ +RLCL RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 284 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 135
W +C + + ACPR P + P I+ +RLCL RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 284 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 135
W +C + + ACPR P + P I+ +RLCL RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,919
Number of Sequences: 27780
Number of extensions: 261270
Number of successful extensions: 894
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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