Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0500
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.9  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   9.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.2  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 151 RLVRGIGTHRILLQRSPQYSRFPFRSSSSV 62
           R V     + ILL+   ++  FPFR ++ +
Sbjct: 189 RAVIDFDNNEILLRNGEKHHSFPFRKTTEI 218


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 GYQTPESAKVENRVRSGDVTGS 237
           GY TPES   E   R+ D+T S
Sbjct: 44  GYHTPESLHYEG--RAVDITTS 63


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 3   RNSARGRPEVSH 38
           R  ARGR +VSH
Sbjct: 259 RTDARGRMDVSH 270


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 206 IASDPETSPARISTRTAKTIS 268
           +  DP +SP   + RT  ++S
Sbjct: 158 VGGDPASSPGAAAGRTGNSLS 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,561
Number of Sequences: 336
Number of extensions: 2460
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)