Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0500
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 29 0.44
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 1.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 3.1
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 4.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.1
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 4.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 4.1
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 5.4
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 5.4
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 5.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 7.2
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 25 7.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.2
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.5
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 9.5
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 92 RILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETS 229
R++ + +K+++ P T DKT +P D K N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 492 KGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCFFVSNTCSPHIWSLFYL 340
+ F+ LL I+ +S L L S F+PC +T +W LF+L
Sbjct: 175 QSFISLLQILPEPFLKSQLSHTLPVGSKYFFVPCDKKHHTLGLLLWKLFFL 225
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 167 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 283
P + LP+ S I+ D ETS A + + + T +S VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +1
Query: 103 DYVEEVYDASQYHGQD-GLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLIKVR 279
+YV V + G+ G+G Y + E+ K+ R + V+ + +YK +N +
Sbjct: 291 EYVARVKATHENGGETKGIG-YRAPFSLEETRKLVLRTHTTAVSANMLYKLAQNGFHPAK 349
Query: 280 YWSDRDGFHQE--DNLPKVELKQVE 348
Y+S F E D E QVE
Sbjct: 350 YFSIDRVFRNETVDATHLAEFHQVE 374
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 454 LPKDYYQQTYKALPSDYYQPQAS 522
+PK Y + Y +PS Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 127 HRILLQRSPQYSRFPFRSSSSVQEWGLL 44
HR+++Q +P Y R V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 52 PTLGHYWKSGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 231
PT+ + K + Y + Y+ ++ +D + Y + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392
Query: 232 GSYIYKDGKNDLIKVRYWSD 291
+ I G DL K+ + D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 48 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 167
R + WT + KG Y L+ + + P TRR R C
Sbjct: 59 RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 168 LRIPNSRICEGRKSRQIRRRHRLVYLQGRQKRS 266
L+ PN R +K + RRR R + LQ Q S
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 85 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 198
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 531 LLFGCLWLVIITWKGFVGLLVI 466
LLFGCL +V + F+GL +
Sbjct: 49 LLFGCLTIVFSAFASFLGLYFV 70
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 26 RGFAQLKQAPLLDTTGRAERKSR 94
R F+QLK LLD+ +RKSR
Sbjct: 329 REFSQLKLKDLLDSRDSGKRKSR 351
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 91 ENTEDYVEEVYDASQYHGQDGLGAYAYG 174
++TEDYV ++Y+AS + +AYG
Sbjct: 175 QSTEDYVYDIYEASS--KEPNKPTFAYG 200
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 114 RSIRCVPIPRTRRSRCICLRIPNSRI---CEGRKSRQIRRRHRLVYLQGRQKRS 266
R + + R+ + +R+PN RI C+G S I+R RL L R+ +S
Sbjct: 836 RILNIIEFTSKRKCMSVIVRMPNGRICLFCKGADSAIIKRL-RLSNLAKRKDKS 888
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.5
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +1
Query: 103 DYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDL----I 270
+Y+ E Y D L YA Y + + + S + S +Y + K + I
Sbjct: 121 EYLRERYVKQLKFLPDELNNYADVYM--RATPMVRALESLEHVFSGLYPESKRKMGLPVI 178
Query: 271 KVRYWSDRDGFHQEDNLPKVELKQVEEAPDVRAARI 378
R WSD + E+N P+ L Q+ E RAA++
Sbjct: 179 FTRNWSDENLLPNENNCPR--LVQLYEEFAERAAKL 212
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Frame = +3
Query: 120 IRC-VPIPRTRRSR 158
IRC +PIPRTR SR
Sbjct: 34 IRCDIPIPRTRTSR 47
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +1
Query: 259 NDLIKVRYWSDRD-----GFHQEDNLPKVELKQV 345
+DL K YWSD+D G + D +P V+ +V
Sbjct: 45 HDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEV 78
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 102 LSILDFLSALPVVSKSGAC--FNCA 34
L +LDFL P +S+ G C NCA
Sbjct: 36 LRLLDFLEYYPGLSEIGCCNELNCA 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,024
Number of Sequences: 5004
Number of extensions: 42069
Number of successful extensions: 128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -