Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0500
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13) 32 0.26
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 1.1
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 30 1.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 1.4
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 29 1.8
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 29 1.8
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 29 1.8
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 2.4
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 3.2
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24) 27 9.8
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 27 9.8
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 35.1 bits (77), Expect = 0.037
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 44 KQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDP 220
K + DTT AE + T + + T P TT K P T P + + P
Sbjct: 1849 KTTVVADTTSVAETAALPKTTAVPETTTPPETTAKPETTGAPETTSAPKTTAVPEATAAP 1908
Query: 221 ETSPARISTRTAKTISSRYVTGQTVTVSTRKTTYL 325
ET+ A +T +T S+ T T S +TT L
Sbjct: 1909 ETTSAPETTAAPETTSAPETTSVPETTSAPETTAL 1943
Score = 33.1 bits (72), Expect = 0.15
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARI 241
+TTG E S T + + T P TT P T P + S PET+ A
Sbjct: 1885 ETTGAPETTSAPKTTAVPEATAAPETTSAPETTAAPETTSAP-----ETTSVPETTSAPE 1939
Query: 242 STRTAKTISSRYVTGQTVTVSTRKTTYL 325
+T +T +S T + T +TT++
Sbjct: 1940 TTALPETTASPETTAKPDTTGAPETTFV 1967
Score = 32.7 bits (71), Expect = 0.20
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = +2
Query: 50 APLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPET 226
A + +TT E S T L K T P TT + P T P K + PET
Sbjct: 2127 AAVPETTSVPETTSAPENTALPKTTALPETTAAPETIAKPETTAPPETTALPKTTTLPET 2186
Query: 227 SPARISTRTAKTISSRYVTGQTVTVSTRKTTYLRSS 334
+ A +T +T + T + T + R TT + S
Sbjct: 2187 TAAPETTAKPETTGAPETTSASDTTAVRGTTAVPES 2222
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPETSPAR 238
+TTG E S T +++ T P TT + +P T P ++ + P T+ A
Sbjct: 2359 ETTGAPETTSAPKTTAVQEATASPETTSEPETTALPKTTAAPETTSPTETTAVPGTTAAP 2418
Query: 239 ISTRTAKTISSRYVTGQTVTVSTRKTT 319
+T + +T + TG T + TT
Sbjct: 2419 KTTASPETTAKPDTTGAAETTAVPVTT 2445
Score = 30.7 bits (66), Expect = 0.80
Identities = 24/72 (33%), Positives = 29/72 (40%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 283
T + K T P TT P T LP KI + PET+ +T +T S T
Sbjct: 2896 TAVPKTTAAPETTPLPKTTAAPETTTLP-----KITAAPETTAVPKTTAAPETTSVPKTT 2950
Query: 284 GQTVTVSTRKTT 319
T S KTT
Sbjct: 2951 AAPETTSVPKTT 2962
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +2
Query: 65 TTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRS-KIASDPETSPARI 241
TT E + TTL K T+ P TT P T +P + + S P+T+ A
Sbjct: 2703 TTAAPEATAVPETTTLPKTTVAPETTTLPKTTAAPETTAVPKTTAAPETTSVPKTTAAPG 2762
Query: 242 STRTAKTISSRYVTGQTVTVSTRKTT 319
++ KT + T T + +TT
Sbjct: 2763 TSTVPKTTVAAETTSVPKTTAIMETT 2788
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 283
T++ K T P TT P T LP K + PET+P +T +T + T
Sbjct: 2944 TSVPKTTAAPETTSVPKTTAAPETTPLP-----KTTAAPETTPLPKTTAAPETTTLPKTT 2998
Query: 284 GQTVTVSTRKTT 319
T + KTT
Sbjct: 2999 AAPETTTLPKTT 3010
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 283
T + K T P TT P T +P K + PET+ +T +T S T
Sbjct: 2824 TAVPKTTAAPETTSVPKTTAAPETTSVP-----KTTAAPETTTLPKTTAAPETTSVPKTT 2878
Query: 284 GQTVTVSTRKTT 319
T S KTT
Sbjct: 2879 AAPGTTSVPKTT 2890
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARI 241
+TTG E S T +++ T P TT + +P T P + S ET+
Sbjct: 2902 ETTGAPETTSAPKTTAVQEATASPETTSEPETTALPKTTAAP-----ETTSPTETTAVPG 2956
Query: 242 STRTAKTISSRYVTGQTVTVSTRKTTYL 325
+T KT +S T + T +TT++
Sbjct: 2957 TTAAPKTTASPETTAKPDTTGAAETTFV 2984
Score = 33.1 bits (72), Expect = 0.15
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARI 241
+TTG E S T + + T P TT P T P + S PET+ A
Sbjct: 3040 ETTGAPETTSAPKTTAVPEATAAPETTSAPETTAAPETTSAP-----ETTSVPETTSAPE 3094
Query: 242 STRTAKTISSRYVTGQTVTVSTRKTTYL 325
+T +T +S T + T +TT++
Sbjct: 3095 TTALPETTASPETTAKPDTTGAPETTFV 3122
Score = 27.5 bits (58), Expect = 7.4
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARI 241
DTTG AE + T P TT +P T +P + + P+T+
Sbjct: 2974 DTTGAAETTFVPETIATPETTTVPGTTAAPETTAVPESTSVP-----ETTALPKTTAVPE 3028
Query: 242 STRTAKTISSRYVTGQTVTVSTRKTT 319
+T +T + TG T S KTT
Sbjct: 3029 TTTPPETTAKPETTGAPETTSAPKTT 3054
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 101 RTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRS-KIASDPETSPARISTRTAKTISSRY 277
+T + T P TT + P T P + + + P+T+ +T +T +
Sbjct: 2843 KTGAPEITAAPETTAVPETIETPETTSAPETTSAPETTALPKTTAVPETTTPPETTAKPE 2902
Query: 278 VTGQTVTVSTRKTTYLRSS 334
TG T S KTT ++ +
Sbjct: 2903 TTGAPETTSAPKTTAVQEA 2921
Score = 27.1 bits (57), Expect = 9.8
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +2
Query: 29 GFAQLKQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLR-RSK 205
G ++ AP +TT E T+ + T P TT +P T P + +
Sbjct: 2845 GAPEITAAP--ETTAVPETIETPETTSAPETTSAPETTALPKTTAVPETTTPPETTAKPE 2902
Query: 206 IASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTT 319
PET+ A +T + +S T + T + KTT
Sbjct: 2903 TTGAPETTSAPKTTAVQEATASPETTSEPETTALPKTT 2940
>SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13)
Length = 265
Score = 32.3 bits (70), Expect = 0.26
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 20 TTRGFAQLKQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR 199
T+R + K L +TTG E S T+L + T P TT+ +P T LP
Sbjct: 27 TSRNTSLPKTTSLPETTGLPETTSLPETTSLPETTSLPETTNLPETTSLPETTNLPETTS 86
Query: 200 -SKIASDPETS 229
+ A+ PET+
Sbjct: 87 PPETATPPETT 97
>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 128 RPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISS 271
RP+ T T H P D + P + D +TS R S+ + T+ S
Sbjct: 544 RPSQTPPTSLKHFPGDERTPPTSLKHVPGDEQTSQVRFSSEPSSTLRS 591
>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 97 TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENR 210
TE + + S YHGQDGLG A G + P+ ++++
Sbjct: 151 TEGLTGDFVELSAYHGQDGLGD-AQGLREPDRTPLKDK 187
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 25.4 bits (53), Expect(2) = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 200 SKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKT 316
S+I +DP T+ ++I T A TIS T + +T +T
Sbjct: 29 SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRT 67
Score = 23.4 bits (48), Expect(2) = 1.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 425 SPTLNTLSKLFLRIITSRPTKPFQVIITNHKHP 523
S + T S+ LRIIT TK Q+I T + P
Sbjct: 91 SQIITTPSRTPLRIITDPITKISQIITTLSRTP 123
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 7 IRHEDDPRFRTVEAGPTLGHYWKSGKEIENTEDYVEEVYDASQYHGQDGLGAYAY 171
I+ ++ PR E LG WK+ K+ E + Y+E+ + H ++ G Y Y
Sbjct: 26 IKSQECPRMHNSEISKILGCEWKAMKD-ELKQPYIEKAKELQAQHSRENPG-YKY 78
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Frame = +2
Query: 11 GTRTTRGFAQLKQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPN 190
G TT G +AP TTG T T+ P TT PT T P+
Sbjct: 312 GVVTTTGAPSTTRAP--PTTGAVTTTGAPATTGAPATTVAPTTTGAPTTTGAPTTTGAPS 369
Query: 191 LRRSKIASD-PETSPARISTRTAKTISSRYVTGQTVT 298
+ ++ P T+ A +T T + TG T
Sbjct: 370 TTEAPSTTEAPSTTEAPSTTEVPTTSAVPTTTGAPTT 406
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIAS-DPETSPAR 238
+TT E T + TM P TT P T P + + + PET+ A
Sbjct: 514 ETTAAPETTMAPETTAAPETTMAPETTIAPEATVAPETTMAPETTAAPVTTMAPETTAAL 573
Query: 239 ISTRTAKTISSRYVTGQTVTVSTRKTT 319
+T +T ++R T T KTT
Sbjct: 574 ETTMAPETTAARETTVAPETTLAPKTT 600
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 122 TMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKT 262
TM P T P+ T P S I PETSPA IS T KT
Sbjct: 3087 TMAPEATVVPKTTVGPSTTISPKTETS-ITETPETSPATISISTEKT 3132
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRS-KIASDPETSPARISTRTAKTISSRYV 280
T+ TM P TT V P T P + + PET+ A +T +T ++
Sbjct: 3316 TSAPATTMAPETTAAPVTTMAPETTAAPATTAALETTMVPETTAASETTVAPETTDAQAT 3375
Query: 281 TGQTVTVSTRKTT 319
T T + +KTT
Sbjct: 3376 TLAPETTAAQKTT 3388
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMP-TDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYV 280
T + T+ P TTD P T T L +K PET+PA +T ++ ++
Sbjct: 217 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 276
Query: 281 TGQTVTVSTRKTT 319
T T +++TT
Sbjct: 277 TVAPETTVSQETT 289
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 167 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVT 298
PT T L+ ++ +S P TSPA T T + +T TVT
Sbjct: 773 PTATTTSTLQTTEPSSTPSTSPALTVTMTTVIATDSSITPTTVT 816
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 104 TTLKKYTMRPNTTDKTV*VHMP-TDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYV 280
T + T+ P TTD P T T L +K PET+PA +T ++ ++
Sbjct: 2279 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 2338
Query: 281 TGQTVTVSTRKTT 319
T T +++TT
Sbjct: 2339 TVAPETTVSQETT 2351
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +2
Query: 23 TRGFAQLKQAPLLDTTGRAERKSRILRTTLKKYTMRPNTT----DKTV*VHMPTDTKLPN 190
TR F + Q P D T + TT+ YT +TT T+ ++ T T
Sbjct: 369 TRKF-ECVQVPPTDFTTITTITNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTT 427
Query: 191 LRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTT 319
+ + T +T TIS+ Y T T+T++T TT
Sbjct: 428 ITTNYTTIVTITITTNYTTIVTITISTNYTTIVTITITTNYTT 470
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +2
Query: 56 LLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLP-NLRRSKIASDPETSP 232
+++TT E + I TT K T P T +T T T+ P + + ++ T+
Sbjct: 12 IIETTTTTEEPTTITETTTTKTTEEPTTITETT-----TTTEEPTTITETTTTTEEPTTI 66
Query: 233 ARISTRTAKTISSRYVTGQTVTVSTR 310
I+T T + ++ +T T R
Sbjct: 67 TEITTTTEEPTTTTTTAAETPTTIMR 92
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 158 VHMPTDTKLPNLRRSKIAS-DPETSPARISTRTAKTISSRYVTGQTVTVSTRKTTYLRSS 334
VH P+L + ++ P T+ I R+ + SR GQ T+ST KTT +S
Sbjct: 1701 VHSIPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTNRVHSRAQEGQIPTLSTLKTTSTSTS 1760
Query: 335 *NK 343
K
Sbjct: 1761 TTK 1763
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 272 LMRSFLPSL*IYEPVTSPDLTRFSTF----ADSGVWYP*AYAPRPSCPWYWD 129
L R+FLP +Y + +PDLT+ T D + Y + C WYWD
Sbjct: 1550 LRRTFLPYQGLYYVLITPDLTKQQTLLWRSGDLNISYGLGFY-ESGC-WYWD 1599
>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 40 VEAGPTLGHYWKSGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTP 186
VEAG L + + + + +VE AS+ G++GL A A G TP
Sbjct: 229 VEAGRRLAKWNRQNRAKKKAVQHVESPV-ASESQGREGLRARAEGIHTP 276
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +2
Query: 62 DTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRS-KIASDPETSPAR 238
+TT E + T + T+ P TT P T P + + PET+ A
Sbjct: 494 ETTKEPETTAAPDTTAAPETTVAPETTIAPETTATPETTAAPETTVAPETTMTPETTAAP 553
Query: 239 ISTRTAKTISSRYVTGQTVTVSTRKTT 319
+T +T ++ T + T + KTT
Sbjct: 554 ETTTAPETTAASETTAASETTAAPKTT 580
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 61 GHYWKSGKEIENTEDYVEEVYD 126
G +W+S EI+N E VE +Y+
Sbjct: 199 GEWWRSWYEIDNLESSVEALYE 220
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.1 bits (57), Expect = 9.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = +2
Query: 65 TTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARI- 241
TT + + RT T P+T+ + T P + S P TS R
Sbjct: 31 TTNTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTG 90
Query: 242 -STRTAKTISSRYVTGQTVTVSTRKTTYLRSS 334
+T T+ +S TG T T S T+ +S
Sbjct: 91 STTTTSAPSTSTPRTGSTTTTSAPSTSTTSNS 122
>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
Length = 563
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 SRILRTTLKKYTMRPNTT--DKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTA 256
+R LRT + + TT + H+ T T PN RSK +++P+R STR +
Sbjct: 425 ARPLRTPTRSSLLASFTTMPHSSASFHI-TSTPFPNGYRSKTRCGAQSAPSRCSTRVS 481
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 27.1 bits (57), Expect = 9.8
Identities = 23/90 (25%), Positives = 44/90 (48%)
Frame = +2
Query: 74 RAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRT 253
++ RK + T K + ++T+ V + +P P S +S+ ++SP+ S+ T
Sbjct: 480 KSTRKQGHGKGTNNKRMIPQSSTESQVLISVPGSQ--PQSSTSSSSSNLQSSPSSSSSTT 537
Query: 254 AKTISSRYVTGQTVTVSTRKTTYLRSS*NK 343
+ TIS ++ + STRK + + NK
Sbjct: 538 SATIS---ISKSSADKSTRKQGHGKGKSNK 564
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 49 GPTLGHYWKSGKEIENTEDYVEEV 120
GP L H W+ G E +N E+ V+ V
Sbjct: 723 GPRLRHVWRGGGEEKNQENCVKYV 746
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,556
Number of Sequences: 59808
Number of extensions: 338799
Number of successful extensions: 909
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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