Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0500
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    37   0.008
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    33   0.13 
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    28   4.9  
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    28   4.9  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   4.9  
AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math...    28   4.9  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   6.5  
Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U28412-3|AAC46594.2|   92|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 104 TTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 283
           TT    T  P TT        PT T     + +   + P T+P   +T T  T +++   
Sbjct: 238 TTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTK 297

Query: 284 GQTVTVSTRKTT 319
             T T  T KTT
Sbjct: 298 STTTTTKTTKTT 309


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +2

Query: 44  KQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPE 223
           K+  LLD +    +KS ++ TT KK +       K +   +P+            AS P+
Sbjct: 11  KKTSLLDPS---PKKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPK 64

Query: 224 TSPARISTRTAKTISSRYVTGQTVTVST---RKTTYLRS 331
           TSPA+ +T T   ++ +     T  +ST   RK T  +S
Sbjct: 65  TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 167 PTDTK-LPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTTY 322
           P++T  L   RRSK +S   ++ ++ S R+ KT+SS  V+ +  TV+     Y
Sbjct: 480 PSETNDLSAYRRSKSSSSSVSALSKTSVRSKKTLSSESVSKKLDTVNFSDKEY 532


>Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical
           protein F02D8.1 protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 2   QEFGTRTTRGFAQLKQAPLLDTTGRAERKSRILRTTLKKYTMR 130
           Q+FG RT+RG ++    P L +  R  R+S  L  TL++ +++
Sbjct: 59  QQFGRRTSRGNSKFFSRPPLPSNPRPRRQS--LAATLRRTSIK 99


>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 522 GCLWLVIITWKGFVGLLVII 463
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 IRCVPIPRTRRSRCICLRIPNSRI 191
           +RC+   R RRSR +C+ +   R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 522 GCLWLVIITWKGFVGLLVII 463
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 522 GCLWLVIITWKGFVGLLVII 463
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 46  AGPTLGHYWKSGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 216
           +G T+     +  +  N  +Y+++  D  Q +   G +  Y + ++ +PE++K +EN + 
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361

Query: 217 SGDVTGSYIYKDGKNDLIKVRYWSDRD 297
                     K   NDL+KV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378


>AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math
           domain containingprotein 5 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +1

Query: 55  TLGHYWKSGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 195
           TL H +K+  ++E+        ED+    ++ S  H ++ LG Y Y Y++ ESA
Sbjct: 9   TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 176  TKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVST 307
            T+LP +  +    +P T+ A +ST TA+ + +      + + ST
Sbjct: 906  TELPKISSTLSFGNPTTAAAPVSTATAEAVKTNVFGSNSASAST 949


>Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical
           protein ZC410.4b protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 172 GYQTPESAKVENRVRSG--DVTGSYIYKDGKND----LIKVRYWSDRDGFHQEDNLPKVE 333
           G   P    VE+ V S   DV  S    D + +     ++  +W   DG H E  LP  +
Sbjct: 675 GKSKPSRNSVEHPVMSDWKDVEESETAPDEEEEEEIGSVESLHWDPVDGMHAEKQLPVKK 734

Query: 334 LKQVEEAP 357
           LK + ++P
Sbjct: 735 LKAMFDSP 742


>Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical
           protein ZC410.4a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 172 GYQTPESAKVENRVRSG--DVTGSYIYKDGKND----LIKVRYWSDRDGFHQEDNLPKVE 333
           G   P    VE+ V S   DV  S    D + +     ++  +W   DG H E  LP  +
Sbjct: 675 GKSKPSRNSVEHPVMSDWKDVEESETAPDEEEEEEIGSVESLHWDPVDGMHAEKQLPVKK 734

Query: 334 LKQVEEAP 357
           LK + ++P
Sbjct: 735 LKAMFDSP 742


>U28412-3|AAC46594.2|   92|Caenorhabditis elegans Hypothetical
           protein T19C3.3 protein.
          Length = 92

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 RSKIASDPETSPARISTRTAKTISSRYVTGQ 289
           +S+I  D   SP+R   RT + +S   VTG+
Sbjct: 50  KSQIFDDVPASPSRTPKRTVQVVSRNPVTGE 80


>AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical
           protein F49H12.2 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 35  AQLKQAPLLDTTGRAERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTK--LPNLRRSKI 208
           A+  + P +   G  E + R     L+K   R N   +T  +H P+DT+  + N   +  
Sbjct: 25  AEPTKKPKVVWPGEFENQLRKRNRNLEKIDERENNRLETPAIHTPSDTQSLISNEEDAHS 84

Query: 209 ASD--PETSP 232
            SD  PET P
Sbjct: 85  TSDLKPETPP 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,001,793
Number of Sequences: 27780
Number of extensions: 241020
Number of successful extensions: 677
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)