Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0500
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    28   3.5  
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin...    28   3.5  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    28   4.6  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    28   4.6  
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati...    27   6.1  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    27   6.1  

>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +1

Query: 130 SQYHGQDGLGAYAYGYQTPES-AKVENRVRSGDVTGSY---IYK--DGKNDLIKVRYWSD 291
           SQ  G+ GL AY      P + A  E +  +   T      I K  DGK +    +    
Sbjct: 120 SQIKGEIGLKAYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEK 179

Query: 292 RDGFHQEDNLPKVELKQVEEAPD 360
           ++G  +E+  PK E K  E+ PD
Sbjct: 180 KEGDKKEEEKPKEEAKPDEKKPD 202


>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
           protein contains Pfam PF00403: Heavy-metal-associated
           domain; similar to copper homeostasis factor (CCH)
           (ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
           thaliana]
          Length = 259

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 197 RSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTT 319
           R  + SDP++    +    AKT+ +    G+  T++ +KTT
Sbjct: 134 RYLLGSDPDSITGSVDQDPAKTVEAEAPAGEDKTLTEKKTT 174


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 160 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 297
           +Y  G +T  +++V  ++  G+    Y++ DG+N +I   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 201 RKSRQIRRRHRLVYLQGRQKRSHQ 272
           R S + + RHRL+  +G QK +HQ
Sbjct: 201 RLSAENKTRHRLIQQKGHQKENHQ 224


>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
           similar to protein-serine/threonine kinase [Nicotiana
           tabacum] gi|505146|dbj|BAA06538
          Length = 434

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 196 SQIREFGIRRHMHLDRLVRGI-GTHRILLQRSPQY-SRFPFRSSSSVQEWGLLQL 38
           +++ +FG+ + M LDR+  G+ GTH  +    P Y S   +   S +  +G++ L
Sbjct: 251 AKVADFGLSKEMVLDRMTSGLKGTHGYM---DPTYISTNKYTMKSDIYSFGVIIL 302


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 187 ESAKVENRVRSGDVTGSYIYKDGKNDLIKVRYWSDRDGFHQEDNLP 324
           ESA++++ +  G   G Y+   G N+L +  Y    D F  +DN P
Sbjct: 617 ESAEIKDNLAVGIPEGEYMDLSGTNELARCAY---NDVFTGQDNQP 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,137
Number of Sequences: 28952
Number of extensions: 230767
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)