Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0497
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 33 0.19
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) 32 0.33
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07) 29 3.0
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 29 3.0
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7) 29 4.0
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 7.0
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 9.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 27 9.3
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 219 SSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKRVSRLE 353
S ++ IQ+G SKD E++ ++ I ++ H K W + V L+
Sbjct: 291 SKLDEIQDGLSKDEFAETQDGLKDQIKKNHHVKKWIVKAPVEILQ 335
>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
Length = 284
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 220 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 399
V+ YK S+ D G YT+ N KR F N + ++K FE++ R K
Sbjct: 172 VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFENATERIIKVASN 230
Query: 400 PT 405
T
Sbjct: 231 GT 232
>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
Length = 653
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 220 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESS 369
V+ YK S+ D G YT+ N KR F N + ++K FE++
Sbjct: 53 VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFENA 101
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 268 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 429
S++DDI N ++++ F N+ DS++ + SF A K PT S S
Sbjct: 85 SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144
Query: 430 SP 435
SP
Sbjct: 145 SP 146
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 202 FRSSRRVQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRS 381
F+SSR IL + +TC S S ++ ++ ++ + +N S S SS S
Sbjct: 95 FKSSRMFVYILIAFLVPYVTCTSSSSSNSSRSSSSSSNSN---SNSSSSSSSSSSSSSGS 151
Query: 382 FKARKEPTGERSNRSDS 432
+ + SN S S
Sbjct: 152 SSSSNSNSNSNSNSSSS 168
>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
Length = 373
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 426 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 340
TP P CW ++ K +R TT ++ ++ +
Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157
>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 515 YASTMLHGSNSEFFQELDQLCSDPEREEQT 604
+ TM S SE QEL +L DPE +E T
Sbjct: 54 HVKTMAEESMSEASQELKELKGDPESQEPT 83
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 249 SKDHLPESERRYRNSIHQSKHQK 317
S+D + ERR RN IH K QK
Sbjct: 143 SRDETGDFERRLRNEIHDLKEQK 165
>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 605 VFVLPFLDRSTTDPVLGRTLSSNREALCSRITVPVSNIPRKSW 477
+ + L + VLGR LS A C TVP IP K W
Sbjct: 353 IVIFVILPLNLVGTVLGRNLSGTPNAPCRVNTVP-RPIPEKKW 394
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 247 AQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRS 426
A++ P +S + ++KR+ + + H S PRS K + P R ++S
Sbjct: 245 ARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSRSRSPRS-KRSRSPRKRRRSKS 303
Query: 427 DSPRK 441
SPR+
Sbjct: 304 RSPRR 308
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -3
Query: 438 PW*ITPVRPFACWFFSGFKRSRSTTFKMFRVLRLVCEK 325
PW +T RP W KR ++F+ + C+K
Sbjct: 627 PWKMTRARPSLPWISRSIKRQMRKRDRLFKKAKRSCDK 664
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -3
Query: 528 IVLAYNCS---GFKYSSEKLAVGTVP 460
+ L YNCS G+K +L VGT+P
Sbjct: 266 LTLGYNCSCFSGYKLQGARLCVGTLP 291
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 431 HQGNNGVMPQGTVPTASFSEEYLKPEQLYASTMLHGSNS-EFFQELDQLCSDPEREEQ 601
H +G++ S E + QL A +H + +FF+ L + CSDP E+
Sbjct: 163 HDDFSGILLPAVQKALLRSPEVVLEWQLRAKEEIHRQQAIQFFKNLSKQCSDPAAVEE 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,037,966
Number of Sequences: 59808
Number of extensions: 362476
Number of successful extensions: 1614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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