Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0495
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.0  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.0  
At2g14660.1 68415.m01649 expressed protein contains Pfam PF04543...    27   9.3  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 178 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 77
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 169 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 62
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At2g14660.1 68415.m01649 expressed protein contains Pfam PF04543:
           Family of unknown function (DUF589); similar to cThy28kD
           (GI:995778) [Gallus gallus]; similar to thymocyte
           protein mThy28 (GI:23978374) [Mus musculus]
          Length = 158

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 497 SRCSSVSVEVGRQFYSDCAFMVDNEAIYDI 586
           SRC    VEV R++Y+D A  V+ E   D+
Sbjct: 61  SRCVVGVVEVSREWYTDDAEGVEGEGAVDV 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,833
Number of Sequences: 28952
Number of extensions: 268614
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)