Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0494
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.4  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   3.1  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   7.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   9.5  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 130 QFKKGIKMQGPAVFMDISXEDQALELRRYFKSLGAEISEEKSPKGIEDD 276
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 416 LNAKIRFSPLSNGIETII-ETILFRMASMSDSLGSLKQASQTPTILCRSSSMPLGDFSSE 240
           LN  +  S L  G + +I + ++  + S+S+S   L  AS  P    R  ++   +  + 
Sbjct: 109 LNINLAVSSLILGSKVLIHQNLIPSLFSVSNSTKLLYSASLLPRSSERLVTLETNEIDAS 168

Query: 239 ISAPRLLKYLL 207
           +    LLKY+L
Sbjct: 169 VVIETLLKYIL 179


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +1

Query: 202 ELRRYFKSLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEPSESDIEAILNS 354
           EL  Y   L   +IS +K+P+      +E+DL +++ + +   +E  E+D     NS
Sbjct: 4   ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 215 ILRALAPRFQKKNHLRALRMICIR 286
           ILR LAP F +KN L+ L  +  R
Sbjct: 97  ILRLLAPFFTEKNALKVLEWLIRR 120


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 268 EDDLHKIVGVCDACFKEPSESDIEAIL 348
           + DLH I+G    C  E + SD+ A L
Sbjct: 262 DKDLHHILGKFGCCIVERTGSDVWAFL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,167
Number of Sequences: 5004
Number of extensions: 41192
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)