Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0494
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   5.0  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   6.6  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 196  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 288
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 196  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 288
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 196  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 288
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 175  DISXEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 315
            DI    +A +LR Y KSL   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 178  ISXEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 351
            +S EDQ LEL    + +  E+ +EK+ K   D   K+    +  + +  E D EA    N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313

Query: 352  SIVSIMVSIPLERGENL 402
             +VS + S   E  + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,036
Number of Sequences: 27780
Number of extensions: 224757
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)