Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0493
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   117   1e-27
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.46 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.61 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.61 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   1.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.3  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.3  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   5.7  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   7.5  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   7.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   7.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.9  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   9.9  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   9.9  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  117 bits (281), Expect = 1e-27
 Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
 Frame = +1

Query: 88  KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 264
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV ++   L 
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73

Query: 265 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 438
             + +ED      ++R  VL EL EL++ V+ +L +++  D++  +   +D    + HL 
Sbjct: 74  GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130

Query: 439 TNKEYEFKIEMIDSMYRLAKYRYECGNHVESASYLY 546
             + Y    E I  +Y+ A+++Y CGN+  ++  LY
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLY 165


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 391 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRY 507
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRY 218


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 103  FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 222
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -3

Query: 513 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 352
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 202 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 381
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++ E VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 382 VMK 390
           V K
Sbjct: 248 VCK 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 376  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 498
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 510 FIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIP 406
           F  IFGQ I AID ++ KL  +  +    +SF  P
Sbjct: 351 FFGIFGQKIDAIDFYSAKLYKISQQIENARSFDYP 385


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 349  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 468
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 360
           VTDI+ +L  + DTP   ++  G   +     L+  +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 166 KETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 297
           ++ YD SE+L  ++E+ S      Y      +  P E T E ++
Sbjct: 163 QKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQEPVV 206


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 385 MKTIETMRDPKTLINHLSTNKEYEFKIEMID 477
           MKTIE    P  L   +  +K Y   +E ID
Sbjct: 64  MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -3

Query: 417 FRIPHGFNCFHYIISLHESQYWLYC---ILKFLQFRKNY--TSPLYNFFRSVFFRIEHSS 253
           F +PHG   ++ ++    +QY ++    I+  L F+K+    S  +  +    FR+E S 
Sbjct: 69  FFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESR 128

Query: 252 DVSN 241
           +V +
Sbjct: 129 NVED 132


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 306  SPLYNFFRSVFFRIEHSSDVSNIIYH 229
            S L N+F+ +    EHS D ++ + H
Sbjct: 990  SKLVNYFKRIHGTNEHSKDTADFVLH 1015


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 29/121 (23%), Positives = 53/121 (43%)
 Frame = +1

Query: 127 RHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRR 306
           R+++  L E +  +E   + EL     +I  +   +DYV   RR+        E I    
Sbjct: 540 RYVIESLPEEMQTEEL--RKELRVQLPKIGGRLRDLDYVA--RRLRVNSSSVSEAI---- 591

Query: 307 GVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMY 486
           G ++S  Q   D ++  LR        K   T  +  TLI +LS ++   + + M+D ++
Sbjct: 592 GGIVS--QNASDILQTFLRPASLTSEEKPTFTPEESWTLITYLSQHEYIPYHMLMLDPLF 649

Query: 487 R 489
           +
Sbjct: 650 K 650


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 196 AGALTGHMSPLLLRILVKETRDADQD 119
           A A    + P+LL++L  +  DAD+D
Sbjct: 315 ARAAAADILPVLLKLLCNQDEDADED 340


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 420 SFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSP 301
           S +I  GF+     I++ E +   + ++ FL F K Y+ P
Sbjct: 36  SMQIYRGFDTITNKITVEEQENVHHRLMSFLNFDKEYSVP 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,842
Number of Sequences: 5004
Number of extensions: 41006
Number of successful extensions: 117
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)