Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0493
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                      66   2e-11
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     42   3e-04
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  38   0.007
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   31   0.84 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  29   2.6  
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   5.9  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   5.9  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            28   5.9  
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)            27   7.8  
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    27   7.8  
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)            27   7.8  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   7.8  
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               27   7.8  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 35/106 (33%), Positives = 58/106 (54%)
 Frame = +1

Query: 232 IDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRD 411
           +D+  D+ + LYP+E+ P  ++++R  V+ EL++LQ   EP+            I    D
Sbjct: 6   VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53

Query: 412 PKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNHVESASYLYF 549
           P+            + K EM+D +Y+ AK++YECGN+  +A YLYF
Sbjct: 54  PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYF 90


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 469 MIDSMYRLAKYRYECGNHVESASYLYF 549
           M+D +Y+ AK++YECGN+  +A YLYF
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYF 27


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 346 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNHV 525
           +E  ++L +   V +T  T    + L N L   KEY+  +E+    YRL K R   G H 
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHP 765

Query: 526 ESASYLY 546
           E+A  LY
Sbjct: 766 ETARILY 772


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 238 YVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 393
           Y+ D   ++YP  DT  EII +  V +  ++E  + +  VL  ++R+ + KT
Sbjct: 215 YLVDCPGVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 256 RMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 432
           R LYPE +     + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 433 LSTNKEYEFKIEMIDSM 483
           L  ++ +  + ++  +M
Sbjct: 571 LCASEGFREQGDLAAAM 587


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
 Frame = +1

Query: 298  QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 459
            +R   +L +++EL   V+ + + +++  ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 460  KIEMIDSMYR 489
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +1

Query: 163  AKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQD 342
            A+ET +  + LQ K     K  + + ++D+   +  EE+    + + +  +L E+Q+L+D
Sbjct: 934  AQETEEMRQRLQTK-----KNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLED 988

Query: 343  AVE 351
            ++E
Sbjct: 989  SLE 991


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
 Frame = +1

Query: 271  EEDTPEEIIQRRGVVLSE--LQELQDAVEPVLRL------MQRDDVMKTIETMRDPKTLI 426
            EED  E+ I    +      LQEL++ VE + R         RDD+ K  ET+   K ++
Sbjct: 1215 EEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMV 1274

Query: 427  NHL---STNKEYEFK 462
            N L   +T ++ +F+
Sbjct: 1275 NQLKNEATEQKNDFR 1289


>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 357 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 238
           Y+L+CIL+ L+  KNY    +  F   F  ++H+  +S +
Sbjct: 57  YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHNVLMSEL 96


>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 329

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 357 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 238
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 90  YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 129


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 357 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 238
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 417 YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 456


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/101 (21%), Positives = 48/101 (47%)
 Frame = +1

Query: 181  QSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 360
            Q+E+ +A  E+    +  +    I   L    + PE    +RG+      + +  V  V 
Sbjct: 1041 QAEISKAISEVTENDDKEN--VSIMNELKKNVEEPERFHNQRGI--DHETDFRKMVRAVF 1096

Query: 361  RLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSM 483
             +++  D+ + I+++++  ++   +  NKE E KIE ++ M
Sbjct: 1097 AIIE--DLKERIKSVKENTSISTEVLFNKEMEKKIEELEGM 1135


>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
          Length = 58

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 433 LSTNKEYEFKIEMIDSMYRLAKYRYECGNHVES 531
           +S N  YE K++   S  RLAK+R+   ++ E+
Sbjct: 15  MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47


>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +1

Query: 274 EDTPEEIIQRRG-----VVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHL 435
           ED  EE+++RRG     ++L +L EL        RL+ +  ++    +  + K  L  + 
Sbjct: 497 EDKEEELLRRRGDLLVVMLLGDLAELDAWFTETRRLLDQPVIVVGSNSFLEAKQQLETYR 556

Query: 436 STNKEYEFKIEMIDSM 483
             +KE E+K + +D +
Sbjct: 557 RISKELEYKQQGLDKL 572


>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
          Length = 45

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 433 LSTNKEYEFKIEMIDSMYRLAKYRYECGNHVES 531
           +S N  YE K++   S  RLAK+R+   ++ E+
Sbjct: 2   MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +1

Query: 313  VLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 492
            ++ +++ELQ+  E      QR+D  +  E +R   +L+      +  E   +M +   + 
Sbjct: 2663 LIQQMRELQNQSEKYRFQKQREDCEREKEHLRQQVSLMRSKGNTQSEELIQQMRELQNQS 2722

Query: 493  AKYRYE 510
             KYR++
Sbjct: 2723 EKYRFQ 2728


>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +1

Query: 292 IIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE- 468
           ++Q +   +S  ++  DA E V  L Q+      +++ ++   +++H  TN+E E KIE 
Sbjct: 128 LVQLKAQEVSRRKDNVDATEMVQSLRQQ------VQSTQNEVKILSHTITNREAELKIEA 181

Query: 469 -MIDSMYRLAKYRYECGNHVESASYLY 546
             I S+    +       HV +A+ +Y
Sbjct: 182 NKIVSLTHELQEEKSKEQHVLAANEMY 208


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 196 QAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 297
           Q + + +SK+N++D + +  R+LY E + P+  +
Sbjct: 355 QFRSKEISKSNVVDDMVESNRVLYSEGEKPDHCV 388


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 196 QAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 297
           Q + + +SK+N++D + +  R+LY E + P+  +
Sbjct: 221 QFRSKEISKSNVVDDMVESNRVLYSEGEKPDHCV 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,187
Number of Sequences: 59808
Number of extensions: 292131
Number of successful extensions: 800
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)