Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0493
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...   123   7e-29
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    31   0.52 
At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    28   4.8  
At3g58340.1 68416.m06503 meprin and TRAF homology domain-contain...    28   4.8  
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    27   6.4  
At1g25510.1 68414.m03168 aspartyl protease family protein contai...    27   6.4  
At3g62050.1 68416.m06971 expressed protein contains Pfam profile...    27   8.4  
At1g72540.1 68414.m08388 protein kinase, putative similar to aux...    27   8.4  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score =  123 bits (297), Expect = 7e-29
 Identities = 56/156 (35%), Positives = 99/156 (63%)
 Frame = +1

Query: 79  SYSKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 258
           S   +DLT  I   LDRHLVFP+ EFL  ++ Y   ++L++K+++L++TNM+DY  DI +
Sbjct: 4   SKQNYDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAMDIHK 63

Query: 259 MLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 438
            LY  ED P+E+++RR  V++ L+ L++A  P++  +   +    ++ +R  K   N   
Sbjct: 64  SLYHTEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPN---AVQELRADKQ-YNLQM 119

Query: 439 TNKEYEFKIEMIDSMYRLAKYRYECGNHVESASYLY 546
             + Y+   + I+++Y+ AK+++ECGN+  +A YLY
Sbjct: 120 LKERYQIGPDQIEALYQYAKFQFECGNYSGAADYLY 155


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
 Frame = +1

Query: 163 AKETYDQSELLQAKLEILSKT-----NMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSEL 327
           A+E  ++ ++++ K++  +K      NM   V D  ++     D  +E ++  GV+   L
Sbjct: 567 AEEFAEEDKIMKEKIDARNKLETYVYNMKSTVADKEKLAKKISDEDKEKME--GVLKEAL 624

Query: 328 QELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 492
           + L++ V         D+ +K +E + DP     +  T  E E  +EMI   YR+
Sbjct: 625 EWLEENVNAEKE--DYDEKLKEVELVCDPVIKSVYEKTEGENEDTMEMITMSYRI 677


>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 157 LAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 264
           L A  ++D+SEL Q  ++ ++  N ++ V D+R ++
Sbjct: 264 LCALASFDRSELKQKVIDNINFRNFLELVPDVRELI 299


>At3g58340.1 68416.m06503 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 325

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
 Frame = +1

Query: 94  DLTFKIGQYL--DRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLY 267
           +L  K G +L   + ++   +EFL    T D+SE +    ++++KT   +    ++ ++ 
Sbjct: 111 ELNAKDGGFLVNGQVMIVAEVEFLEVIGTLDESEEIIKSSDLINKTQ--EVAQQVKEIIQ 168

Query: 268 PEE--DTPEEIIQ--RRGVVLSELQELQDAVEPVLRLMQR 375
           P +  +  +E+ Q  +  + ++  Q L   VE V R+ ++
Sbjct: 169 PNDLINKTQEVAQQVKESIDVNGFQVLPSQVESVRRIFKK 208


>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +1

Query: 178 DQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEE---IIQRRGVVLSELQELQDAV 348
           +QS  L  +++   +   +D   ++RR L  +E   +     ++     LS    LQD  
Sbjct: 8   NQSFKLHQQVQCKDEIFCLDQKVNVRRSLQVQETVEDHQSFALEEEEQQLSTPSLLQDTT 67

Query: 349 EPVLRLMQRDDVMKTIETMRDPKTL 423
            P L+++Q+ +      + +DP  L
Sbjct: 68  IPFLQMLQQSEDPSPFLSFKDPSFL 92


>At1g25510.1 68414.m03168 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 306 SPLYNFFRSVFFRIEHSSDVSNIIYHVS 223
           SP Y+FF  +FF   HSS  S I+   S
Sbjct: 2   SPNYSFFFFIFFLTSHSSVFSRILPETS 29


>At3g62050.1 68416.m06971 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 157

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 342 ILKFLQFRKNYTSPLYNFFRSVFF-RIEHS 256
           +++ L+ +KNY   +YNF   V++ + EHS
Sbjct: 117 VVQLLKSKKNYNFIIYNFILYVYYQKTEHS 146


>At1g72540.1 68414.m08388 protein kinase, putative similar to
           auxin-regulated dual specificity cytosolic kinase
           [Lycopersicon esculentum] gi|14484938|gb|AAK62821;
           similar to serine/threonine protein kinase
           gi|1066501|gb|AAA81538
          Length = 450

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 307 GVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMY 486
           GVVL E+   + AVE       R+ V      ++DP  L   +  + E ++ +E I    
Sbjct: 278 GVVLLEMLTARKAVEKYRAQRGRNLVEWARPMLKDPNKLERIIDPSLEGKYSVEGIRKAA 337

Query: 487 RLAKYRYECGNH 522
            LA   Y+C +H
Sbjct: 338 ALA---YQCLSH 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,096
Number of Sequences: 28952
Number of extensions: 202013
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)