Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0492
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                35   0.037
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.064
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.11 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.20 
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   4.2  
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   28   5.6  
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)                    27   9.7  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 30/109 (27%), Positives = 49/109 (44%)
 Frame = +2

Query: 209 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 388
           +L L  SY YL  A +F+       GF K F K S +  E    L+K   +RGG++    
Sbjct: 208 NLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQD 267

Query: 389 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSD 535
               + D       E G  + ++  ALD +K + + +  +H+   K+ D
Sbjct: 268 IKKPEKD-------EWGCGMDSIQVALDLEKHVNQALLDLHKIAEKHGD 309



 Score = 31.9 bits (69), Expect = 0.34
 Identities = 21/96 (21%), Positives = 45/96 (46%)
 Frame = +2

Query: 248 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYT 427
           A++F     +  GFA  F+K +++ +      ++ + KRGG++    H  +K  +     
Sbjct: 1   AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRD---- 54

Query: 428 VEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSD 535
              G+ + A+  AL  +K++   +  +H+    N D
Sbjct: 55  -HWGNGLMAMRDALYLEKEINHALLDLHQVADTNRD 89


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 29/109 (26%), Positives = 49/109 (44%)
 Frame = +2

Query: 209 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 388
           +L L  SY Y+  A +F+       GF K F K S +  E    L K   +RGG++    
Sbjct: 140 NLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQD 199

Query: 389 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSD 535
              +K  +  ++    G    A+  ALD +K + + +  +H+   K+ D
Sbjct: 200 ---IKRPERDDW----GCGQDAIQAALDLEKHVNQALLDLHKVAEKHGD 241


>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 17  LQANMKVYALIVACLALGVLAEEDSCDQNVDQGCRRTLSLPHCSAYYGQFKDNH 178
           + ++MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 37  VCSHRCLSGSGCAGRGRLMRSERRPRMQTDFKSAALQRVLR 159
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 29  MKVYALIVACLALGVLAEEDSCDQNVDQGCRRTLSLPHCSAYYGQFKDNH 178
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 230 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 328
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 314 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 409
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
 Frame = +2

Query: 248 ASYFNNYQTNREGFAKLFRKLSDDSWE-----KTIGL----IKHVTKRGGKMDFSSHTTL 400
           A +F+    N  GF K F+K S + WE     KT  L     + +T       F ++ T 
Sbjct: 30  AFHFDRDDINLPGFNKFFKKASKEEWEHAQMVKTAALQTKCYRKLTIVWLLFQFMAYLTK 89

Query: 401 KGDKGSNYTV------EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSD 535
           +G +     +      + G+ + A+  AL  +K++   +  +HR+  + +D
Sbjct: 90  RGGRVKLNDIPTPCRDQWGNGLMAMEDALALEKEILSSLQALHRKAQEEND 140


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 206 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 319
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +1

Query: 130 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQEI 309
           +S +  R   PI G+     R  G    +  +  PLSP   ++    D   R R  LQ +
Sbjct: 119 RSKSPVRSTSPILGRSSSPSRRGGSPSRILNSS-PLSPSKQVVDGDNDTVQRQRRELQLL 177

Query: 310 IGRFVGENHWSHKARH*EGWED 375
           IG     + +SH  +    W++
Sbjct: 178 IGELKDRDRFSHWKKDVRDWKE 199


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 298 LQEIIGRFVGENHWSHKARH*EGWEDGLLESH 393
           L  IIG F+G  + S KA+   G++DG+ +++
Sbjct: 185 LDVIIGTFIGPQNASSKAQGFLGYQDGVFQTN 216


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 209 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 328
           +L L  SY Y   A YF+    +  GF K F+K + +  E
Sbjct: 21  NLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEERE 60


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 208 LTVFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRFVGENHW 339
           L V  TF P S V L +  +PD +G  RE L  ++    G   W
Sbjct: 32  LLVSATFFPPSTVTLRVSLVPDIRGTSREPLYCLLQSSSGLEKW 75


>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
          Length = 563

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 25  KYEGVCSHRCLSGSGCA---GRGRLMRSERRPRMQTDF 129
           K    CS R +S SGCA   G  R +R+  R  +   F
Sbjct: 403 KRSATCSQRSISSSGCAFVCGNARPLRTPTRSSLLASF 440


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 110 GRRSDRMSLPRPAHPEPDR-QR*EHTPSYLPAARGI 6
           GR S+R   PRP  PEP R    + T S  PA + +
Sbjct: 627 GRDSERKRWPRPPSPEPARHSHPDVTSSQSPALKTV 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,461
Number of Sequences: 59808
Number of extensions: 304014
Number of successful extensions: 1683
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)