Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0491
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0402 + 33681451-33681706,33682800-33682936,33683103-336831...    27   7.5  

>03_06_0402 +
           33681451-33681706,33682800-33682936,33683103-33683153,
           33683798-33683866,33684286-33684428,33685464-33685521,
           33685823-33685938,33686298-33686391,33686950-33686961
          Length = 311

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 160 LINIQHIRNSSIHIKKTSCSSLI 228
           LIN++ +RN   HIK   C+SL+
Sbjct: 142 LINLKGMRNVYFHIKSRICTSLV 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,784,321
Number of Sequences: 37544
Number of extensions: 116333
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)