Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0491
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 28 5.8
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12) 28 5.8
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4) 27 7.7
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 7.7
SB_33960| Best HMM Match : Borrelia_orfA (HMM E-Value=2) 27 7.7
SB_31841| Best HMM Match : Mycoplasma_MAA2 (HMM E-Value=6.4) 27 7.7
SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 7.7
SB_20656| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.3) 27 7.7
SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34) 27 7.7
SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011) 27 7.7
SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057) 27 7.7
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63) 27 7.7
SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04) 27 7.7
SB_49637| Best HMM Match : Pkinase_C (HMM E-Value=4.8) 27 7.7
SB_48971| Best HMM Match : DUF1381 (HMM E-Value=4.8) 27 7.7
SB_39025| Best HMM Match : DNA_pol_B_2 (HMM E-Value=6.2) 27 7.7
SB_37114| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_31660| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_31526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_20417| Best HMM Match : Pkinase_C (HMM E-Value=9.5) 27 7.7
SB_15705| Best HMM Match : Autophagy_C (HMM E-Value=4.6) 27 7.7
SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023) 27 7.7
SB_13027| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.4) 27 7.7
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK TR V P+YL
Sbjct: 923 QAKKLISKPNYQHRTIFCENLVVIHMKKTRLVFDKPVYL 961
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ V P+YL
Sbjct: 931 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLVFNKPVYL 969
>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
Length = 1970
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ V P+YL
Sbjct: 1162 QAKKLISKPNYQHRTIFCENLVAIHMKKTKLVFNKPVYL 1200
>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
Length = 835
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 255 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 293
>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 2629
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 1509 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 1547
>SB_33960| Best HMM Match : Borrelia_orfA (HMM E-Value=2)
Length = 662
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 179 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 217
>SB_31841| Best HMM Match : Mycoplasma_MAA2 (HMM E-Value=6.4)
Length = 342
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 100 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 138
>SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1128
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 951 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 989
>SB_20656| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.3)
Length = 379
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 270 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 308
>SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1998
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 1141 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 1179
>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
Length = 792
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 643 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 681
>SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011)
Length = 1092
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 1000 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 1038
>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
Length = 1124
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 464 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 502
>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
Length = 936
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 280 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 318
>SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04)
Length = 963
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 721 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 759
>SB_49637| Best HMM Match : Pkinase_C (HMM E-Value=4.8)
Length = 260
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 18 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 56
>SB_48971| Best HMM Match : DUF1381 (HMM E-Value=4.8)
Length = 260
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 18 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 56
>SB_39025| Best HMM Match : DNA_pol_B_2 (HMM E-Value=6.2)
Length = 478
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 270 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 308
>SB_37114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 192 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 230
>SB_31660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 1075 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 1113
>SB_31526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1248
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 1066 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 1104
>SB_20417| Best HMM Match : Pkinase_C (HMM E-Value=9.5)
Length = 269
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 27 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 65
>SB_15705| Best HMM Match : Autophagy_C (HMM E-Value=4.6)
Length = 342
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 100 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 138
>SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023)
Length = 1901
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 339 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 377
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 938 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 976
>SB_13027| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.4)
Length = 398
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 378 QAKHLIVILN*FNKPIFVLNT*YIHMKSTRYVL--PIYL 488
QAK LI N ++ IF N IHMK T+ + P+YL
Sbjct: 270 QAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYL 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,303
Number of Sequences: 59808
Number of extensions: 155218
Number of successful extensions: 225
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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