Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0491
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.6  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   4.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   4.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   4.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   4.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   4.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 135 KFNYNFNHYINWMYREAETEIHYK*NCXXXXXXKLETSSLP 13
           K+NYN N+Y N  Y       +Y  NC       +    +P
Sbjct: 330 KYNYNNNNYNNNNYNN-----NYNNNCKKLYYNIINIEQIP 365


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 129 NYNFNHYINWMYREAETEIHY 67
           NYN+++Y N  Y++    I+Y
Sbjct: 88  NYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 129 NYNFNHYINWMYREAETEIHY 67
           NYN+++Y N  Y++    I+Y
Sbjct: 88  NYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 129 NYNFNHYINWMYREAETEIHY 67
           NYN+++Y N  Y++    I+Y
Sbjct: 88  NYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 129 NYNFNHYINWMYREAETEIHY 67
           NYN+++Y N  Y++    I+Y
Sbjct: 88  NYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 129 NYNFNHYINWMYREAETEIHY 67
           NYN+++Y N  Y++    I+Y
Sbjct: 88  NYNYSNYNNNNYKQLCYNINY 108


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 135 KFNYNFNHYINWMYRE 88
           K+NYN N+Y N  Y +
Sbjct: 95  KYNYNNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 135 KFNYNFNHYINWMYRE 88
           K+NYN N+Y N  Y +
Sbjct: 95  KYNYNNNNYNNNNYNK 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 129 NYN-FNHYINWMYREAETEIHYK 64
           NYN +N+Y N  Y     +++YK
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYK 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,641
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)