Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0489
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.59 
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    28   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.4  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   1.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.1  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   4.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.5  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    25   5.5  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.2  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   7.2  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   7.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   7.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 93   PISE--EDIPPAVSLGKPADSTPSAPLS 170
            P SE  +D PP+  L KP  ++P+APL+
Sbjct: 982  PTSEPPKDHPPSAPLSKPVSTSPAAPLA 1009



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
 Frame = +3

Query: 72   KQAKAGKPISEEDIPPAVSLGK---------PADSTPSAPLSGPV 179
            ++A   +P +   IPP + +           P D  PSAPLS PV
Sbjct: 956  RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPV 1000


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 111 IPPAVSLGKPADSTPSAPLSGPVQPPTDP 197
           +PP+     P  + PS P+  P  PP  P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 494 ESSHQNIELLHCLQKLEC*CFIPRFFTVQRRRFKLCLTFQYCLQLLLSLRSEGIVCL 324
           +S   +I   +CLQ+ +    +  FF + R+  +L     Y L  L S+ S+ IV L
Sbjct: 42  DSCASSIVYAYCLQRKQLGRIVVPFFNIPRKELRLRPELSYLLN-LASISSDDIVFL 97


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 114 PPAVSLGKPADSTPSAPLSGPVQPPTDPEPLLIDLG 221
           PPA  +G P    P   ++G   PP  P P  +  G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 135 KPADSTPSAPLSGPVQPPTDP 197
           +PA +TPSAP   PVQPP DP
Sbjct: 78  EPA-TTPSAP---PVQPPNDP 94


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 312 ESLHQADDTLTPERQQKLQAILKR--QAEFKAAALHCKKSGDKALALE--FLKTVKQFDV 479
           E L      L PERQ  LQA+ ++  Q +   + +   K  D AL     F   +K+FD 
Sbjct: 591 EELQSRVQKLVPERQTTLQALQQKCLQDDISESLMQNSKRKDSALDTNQLFELELKKFDP 650

Query: 480 L 482
           L
Sbjct: 651 L 651


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 93  PISEEDIPPAVSLGKPADSTPSAPLSGPVQPPTDPE 200
           P     +PP      P  S PSAP      PP  P+
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 425 RFFTVQRRRFKLCLTFQYCLQLLLSLRSEGIVC 327
           RF   +   FKL  +  YC +++  L   G VC
Sbjct: 396 RFHDFKHVSFKLPTSCSYCREIIWGLSKRGCVC 428


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 479  NIELLHCLQKLEC*CFIPRFFTVQRRRFKLCLTFQYCL 366
            N  L H LQ L C  FIP F+ +  R       FQ  L
Sbjct: 2285 NNSLQHYLQNLPCKKFIPVFYQLAARLMNENSKFQQSL 2322


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  LNDLLKQAKAGKPISEEDIPPAVSLGK 137
           L+DLL    A K + ++DI P V  G+
Sbjct: 289 LHDLLDSLAASKAMEQQDIKPTVQNGE 315


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 48  YKTLNDLL--KQAKAGKPISEEDIPPAVSLGKPADSTPSAPLSGPVQPP 188
           Y++L+  +  + A   +P+ E   P  V L KP+ +     ++  V PP
Sbjct: 42  YESLSSAIVARDALHNRPVFENHGPVQVMLAKPSSNYEPGNITAAVSPP 90


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 KRQAEFKAAALHCKKSGDK 434
           KR ++FK A L  KKSG+K
Sbjct: 315 KRLSKFKQAKLETKKSGNK 333


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 69  LKQAKAGKPISEEDIPPAV-SLGKPADSTPSAPLSGPVQPPTDPE 200
           L+Q  + +P      P  V S  KP+ +  +AP   P    T+PE
Sbjct: 588 LQQTHSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPE 632


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 178 YNHQQTQSHY**ILDTRI-LPVYQNRKNHRPVYRNQR 285
           +N +    +Y  IL+TR  LPVYQ R+    +Y   +
Sbjct: 56  FNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQ 92


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 42  PRYKTLNDLLKQAKAGKPISEEDIPPA--VSLGKPADSTPSAPLSGPVQPPTDPEP 203
           P   + ++ + ++ +  P S+++   A  V   +   STP  PL     P  +PEP
Sbjct: 382 PSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEP 437


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 514 IPSVVVLKAVTRTSNCFTVFKNSSANALSPDFLQCNAAALN 392
           +   ++   +  T  C  +FK       SP FL+C   A N
Sbjct: 415 VARAIIKNKLVETPECLDLFKIFIQKLASPTFLECLGFADN 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,619
Number of Sequences: 5004
Number of extensions: 35796
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)