Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0488
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EJ77 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q24BX4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A5UKF4 Cluster: Putative uncharacterized protein; n=2; ...    33   7.8  

>UniRef50_A2EJ77 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 451

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
 Frame = +3

Query: 81  NKKKTKSLLFSIFHIIA---HMIIWKEKNIYIFVSFHFF*LEFKIT---TIL*KFHFNIY 242
           NK+KT+SLL  +  +IA   H II K+  +Y+F SF+F+  E K      I  + ++NI 
Sbjct: 92  NKEKTESLLIFLKSLIAFSTHDII-KKIVLYLF-SFYFYQEEHKNIQQFEIFLQEYYNIE 149

Query: 243 FLHTKVSF--LPSKISFY 290
            L TK SF  LP+ IS Y
Sbjct: 150 QLPTKQSFPLLPAYISLY 167


>UniRef50_Q24BX4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 944

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +2

Query: 5   IRHEGTFLIITPKYFCVS*YYPMGEEQKKNEIASFQHLSYYSPHDNLERKKYIYFRFISF 184
           IR+   F++     FC   Y    +++K+NE+   Q L+Y   H ++++K +I+F    F
Sbjct: 8   IRYFSGFMLENKNTFCQDYYDSFIKDKKENEVDK-QSLNYLICHHSMKKKHFIWFNMDGF 66


>UniRef50_A5UKF4 Cluster: Putative uncharacterized protein; n=2;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 252

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 485 ENSRKYGLW-FPWFT-FDVYYFSFYIRFQSTLERSILYICYCKNESII*SFI 634
           E   KYGL+ F  F  F +  FSF +   ST   S+L IC C   +II S +
Sbjct: 71  ELDEKYGLYNFANFRGFSLQIFSFMLLGASTTSLSVLMICLCAGVNIIKSIL 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,493,165
Number of Sequences: 1657284
Number of extensions: 14598731
Number of successful extensions: 31201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31183
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)