Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0488
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.44 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   3.1  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   5.4  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 500 YGLWFPWFTFDVYYFSFYIRFQSTLERSILYICYCKN 610
           Y ++  + T+  Y+F     F   ++R ++Y CYC N
Sbjct: 25  YEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCAN 61


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 14  EGTFLIITPKYFCVS*YYPMGEEQKKNEIASFQHLSYYSPHDNLERKKY 160
           EGT L      F +S +YP G+E   N  +     S+     NL RK+Y
Sbjct: 135 EGTVLYYDQSTFSLSLFYPDGKEYGSNVDSLI--TSFVLTCKNLHRKRY 181


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 480 AKRTHENMVYGFHGLRLTFIIFHFILDSKVH 572
           AK T+E + + +H LR+   I  F+LD   H
Sbjct: 356 AKHTYETIYHQWHSLRIREQIASFMLDIADH 386


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 533 VYYFSFYIRFQSTLERS 583
           + Y SF +RF S LERS
Sbjct: 48  ILYLSFLLRFMSMLERS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,073
Number of Sequences: 5004
Number of extensions: 68429
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)