Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0488
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)                     31   0.62 
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
          Length = 965

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 77  EEQKKNEIASFQHLSYYSPHDNLERKKYIYFRFISFLLTRV*NHNDSIEVSLQYILFTHK 256
           + Q+K++  + +H+ Y+S  +N     Y +   + FL  R   H D+   S + I     
Sbjct: 371 KRQEKSQKETGKHMDYFSDIENCSTDNYDWRLTVMFLFCRTLEHADNTGFSPEQIPMQGT 430

Query: 257 SFIFTLQN 280
           SF +  Q+
Sbjct: 431 SFNYQAQD 438


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 PPKFHFTPFGVIYPGSPTVAICP 339
           P +F F+P+G + P SP    CP
Sbjct: 757 PNRFQFSPYGRVTPDSPGFIECP 779


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,682,313
Number of Sequences: 59808
Number of extensions: 446526
Number of successful extensions: 1068
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)