Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0488
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    31   0.71 
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    29   2.2  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   5.0  
Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical p...    28   6.6  

>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 102 LLFSIFHIIAHMIIWKEKNIYIFVSFHFF*LEFKITTIL*KFHFNIYFLHTKV--SFLPS 275
           LLFSIF+  +  I WK +   I+  F F   +   T  +   H  IY++  ++   F+  
Sbjct: 27  LLFSIFY--SKRIAWKSELSLIYTRFAF---DMFYTFFVP--HNKIYYIIRQIFPGFVVK 79

Query: 276 KISFYPIWGNLP 311
            +SFY IW  +P
Sbjct: 80  NLSFYLIWPTIP 91


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +3

Query: 99  SLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*LEFKITTIL*KFHFNIYFLHTKVSFLP 272
           SL+  IF I  ++I++K + I    +F +F L F+I+ IL  FH  + FL   V F P
Sbjct: 23  SLIADIFSI--YLILFKSEKID---NFRYFLLNFRISCILTDFH--LTFLIQPVPFYP 73


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 102 LLFSIFHIIAHMIIWKEKNIYIFVSFHFF*LEFKITTIL*KFHFNIYFLHTKVS--FLPS 275
           L++SIF+  +  I WK +   I+  F    ++   T  +   H  IY++  ++S  F+  
Sbjct: 26  LIYSIFY--SKRITWKSEFSLIYTRFA---IDIVYTFFVP--HNKIYYVLRQISDIFVMK 78

Query: 276 KISFYPIWGNLPRFPDRCNMPSCIT 350
            ++FY +W  +P    R  +   IT
Sbjct: 79  NLTFYLVWPTIPLGAIRATLVLLIT 103


>Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 FVSFHFF*LEFKITTIL*KFHFNIYFLHTKVSFLPSKISFYP 293
           F+  H + + F+I     +FH  + F+  K++FL +   F P
Sbjct: 177 FICLHGYRMSFRIAFKDNRFHLTLLFVMIKLAFLLTNACFIP 218


>Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 FVSFHFF*LEFKITTIL*KFHFNIYFLHTKVSFLPSKISFYP 293
           F+  H + + F+I     +FH  + F+  K++FL +   F P
Sbjct: 177 FICLHGYRMSFRIAFKDNRFHLTLLFVMIKLAFLLTNACFIP 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,272
Number of Sequences: 27780
Number of extensions: 369011
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)