Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0486
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.51
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.67
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 0.89
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 27 2.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 3.6
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 4.7
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 4.7
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 26 4.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.2
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 8.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.3
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 407 ALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLM 547
AL++ +++W ++CH S+ + ELE+D +D+L + +
Sbjct: 452 ALEIFERLQMWDCVVMCHCSLNRQDLAVQVIKRELENDPYDFLLRTL 498
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.67
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 131 TFHESAGLMLRQFRTLLHRQPLPMPAARLLQLTALNMFAVETTGSTYKGCSGA 289
+++ SAG +L ++RTLL P+ ++ L A N F GS Y S A
Sbjct: 726 SYYRSAGRLLMRYRTLLASFPVV-----VISLAAYNQFRYFHYGSAYLSMSAA 773
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 500 NVELESDSWDWLAKLMNILEILDDKTIKLEN 592
N+ LE +S +W + + ILD+K K+EN
Sbjct: 393 NISLEPNSTEWDDDVSALQSILDNKVSKIEN 423
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 2.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 223 LKESSGRHRQGLSVQQRAELPQHEA 149
+K+S G H+ +++++ E P H+A
Sbjct: 304 VKDSQGSHQTKVTIEENMEAPSHQA 328
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 3.6
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Frame = +2
Query: 221 QLTALNMFAVETTGSTYKGCSGAERPAWLECALGVSLLMFGALVERCCALLPE------P 382
++ ++ FAV T+ S ++ A + A+ V E C +L E
Sbjct: 281 RVDSIGRFAVATSASVHEAIRIANAISKENLAVNVRTAR-DFFREDICGILLEWFDDLLE 339
Query: 383 THTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVEL--ESDSWDWL---AKLM 547
+H + AD LQ++ ++ +W P +F N +E+ + DS D + +L+
Sbjct: 340 SHVCYFADYLQIIVCDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELL 399
Query: 548 NILEILDDKT 577
+++ L D+T
Sbjct: 400 DVIANLQDET 409
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 347 LVERCCALLPEPTHTQHHADALQLLPSIK 433
LV LPEP+ H+D +LL SIK
Sbjct: 239 LVRYARLTLPEPSTPSTHSDLKELLESIK 267
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +2
Query: 128 ETFHESAGLML---RQFRTLLHR----QPLPMPAARLLQLTALNMFAVETTGSTYKGCSG 286
E FH+ +G+ QF+ L+ QP PMP + T +F +TT + S
Sbjct: 142 EPFHDDSGVYYTRQNQFKPTLYNLYNPQPSPMPTLLPYERTVNGLFIDDTTRERIERKSE 201
Query: 287 AER 295
A R
Sbjct: 202 ASR 204
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 377 EPTHTQHHADALQLLPSIKVWSDWML 454
EP Q H DA+ + SIK + W L
Sbjct: 183 EPKEKQRHFDAILTMGSIKAKAKWAL 208
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 410 LQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLMN 550
LQL+ + + S + +S W+P S +FN++L + S+ L +N
Sbjct: 292 LQLIQCLAI-SYPLWSNSETWDPHRSIRSFNLDLLNSSFFSLKNFLN 337
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 52 FC*VEQELYNELFTCSREINNKNRNGNLSRKC 147
FC +E + E C+ ++ + N +G+L +KC
Sbjct: 22 FCFIEYQDSQEPCICTIQLFSGNESGSLMQKC 53
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 392 QHHADALQL-LPSIKVWSDWMLCHSSVWNPPP 484
Q A A+Q+ + S K WS+W L H ++ P
Sbjct: 2909 QAFATAVQIDIGSGKAWSEWGLYHDELFQANP 2940
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,102
Number of Sequences: 5004
Number of extensions: 51252
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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