Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0486
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 43 2e-04
10_01_0197 + 2148109-2149551 30 1.6
06_03_0585 - 22528082-22530100 29 2.1
06_03_0580 + 22489184-22491202 29 2.1
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 29 3.7
01_06_0925 - 33067106-33067280,33069193-33069517,33070757-330707... 29 3.7
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 28 4.8
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 27 8.5
08_02_1349 - 26309330-26309881,26309902-26310534 27 8.5
08_02_1184 - 25008934-25010076 27 8.5
03_05_0161 + 21400580-21401695 27 8.5
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 27 8.5
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Frame = +2
Query: 59 ELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQP-----LPMPAAR--- 214
E+ K+F ++ ++G L T+ +ETF E + ++ + LL P + AA
Sbjct: 535 EILKAFYIRFVRLNGILFTRTSLETFGELSATVISDLQILLSSGPYEELNFGVEAAENAL 594
Query: 215 -LLQLTALNMFAVETTGSTYKGCSGAE---RPAWLECALGVSLLMFGALVERCCALLPEP 382
+++L A+ +F V S AE R L+ A + G L++RC L
Sbjct: 595 SVVKLIAILIFTVHNANKDADNQSYAEIVQRRVLLQNAFAAAFEFVGYLLKRCAEL---- 650
Query: 383 THTQHHADALQLLPSIKVWSDWMLCH 460
H + LP+I V+ +W+ CH
Sbjct: 651 ----HDVASSIYLPAILVFIEWLACH 672
>10_01_0197 + 2148109-2149551
Length = 480
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 59 ELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQF 169
E+ +S +S LH++G+ I K+ ETF E L++ +F
Sbjct: 215 EIVRSHFSSILHLNGENIMKMECETFTERRDLVVVEF 251
>06_03_0585 - 22528082-22530100
Length = 672
Score = 29.5 bits (63), Expect = 2.1
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 2/130 (1%)
Frame = +2
Query: 41 STMTSVELNKSFI--TSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQPLPMPAAR 214
S++T +F+ S+L G +TF +LRQ T P P+ R
Sbjct: 18 SSLTPAATAAAFVGLDSFLAAAAARDPSAGNDTFGALPAALLRQLST-----PSPLLPTR 72
Query: 215 LLQLTALNMFAVETTGSTYKGCSGAERPAWLECALGVSLLMFGALVERCCALLPEPTHTQ 394
LL L+A V G+++ +G +++ A+ S + R L H +
Sbjct: 73 LLSLSAQVPVTVRLAGASFPPATGRLLESFVNSAVSSSRFLSSRRPHRLA--LSHKIHLE 130
Query: 395 HHADALQLLP 424
A + QL P
Sbjct: 131 VAASSSQLAP 140
>06_03_0580 + 22489184-22491202
Length = 672
Score = 29.5 bits (63), Expect = 2.1
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 2/130 (1%)
Frame = +2
Query: 41 STMTSVELNKSFI--TSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQPLPMPAAR 214
S++T +F+ S+L G +TF +LRQ T P P+ R
Sbjct: 18 SSLTPAATAAAFVGLDSFLAAAAARDPSAGNDTFGALPAALLRQLST-----PSPLLPTR 72
Query: 215 LLQLTALNMFAVETTGSTYKGCSGAERPAWLECALGVSLLMFGALVERCCALLPEPTHTQ 394
LL L+A V G+++ +G +++ A+ S + R L H +
Sbjct: 73 LLSLSAQVPVTVRLAGASFPPATGRLLESFVNSAVSSSRFLSSRRPHRLA--LSHKIHLE 130
Query: 395 HHADALQLLP 424
A + QL P
Sbjct: 131 VAASSSQLAP 140
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 405 SAWCWV*VGSGNNAQHLSTSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLSAV 226
S+W V SG N + L T+ ++ H ++A +S P Y + V+ST + ++V
Sbjct: 162 SSWLEVVETSGENVECLVTNTATLAGPMFTLHVSKAHVSLPTLSDYDKEVISTWGLHNSV 221
Query: 225 N*RSLA 208
+ SL+
Sbjct: 222 DIISLS 227
>01_06_0925 -
33067106-33067280,33069193-33069517,33070757-33070795,
33071188-33071395
Length = 248
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 330 CSCSERSWKDAVRYCRNQLTPSTTLMPCSYYPR*RCGPTGCCVTVVSGTHRL-PSPIST* 506
C C+ + DAV R + + C P R GP G +VV H+L PS
Sbjct: 35 CGCTSHRYGDAVGRLRVYASGDLEVS-CECTPGCREGPLGSSSSVVPNAHKLTPSAFEKH 93
Query: 507 NSKATHG 527
+ + T G
Sbjct: 94 SGRETAG 100
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 356 RCCALLPEPTHTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSF 490
RC L P P H H L + SD + ++ W PPPSF
Sbjct: 104 RCSRLAPAPPH--HGRSNRSLKQQQSMVSDKDIEEAARWPPPPSF 146
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 354 STSAPNMSKDTPRAHSNQAGLSA 286
STSA +SK RA++NQAG +A
Sbjct: 509 STSAATLSKAVARANTNQAGPAA 531
>08_02_1349 - 26309330-26309881,26309902-26310534
Length = 394
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 256 RLNCKHVECGQLKESSGRHRQGLSVQQRAELPQHEAGTFVKGFHS 122
RL C L+ +S RHR GLS Q A L G KGFH+
Sbjct: 119 RLLCTKAPSVALRVASLRHRVGLSDPQIASLLLLPGG--AKGFHT 161
>08_02_1184 - 25008934-25010076
Length = 380
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 191 PLPMPAARLLQLTALNMFAVETTGSTYKGCSGAERPAWLECALGVS 328
P P PAA L L AL AV + S CS +R A L +S
Sbjct: 5 PAPSPAAPPLLLAALAALAVVASASA-AACSAGDRDALLAIRAALS 49
>03_05_0161 + 21400580-21401695
Length = 371
Score = 27.5 bits (58), Expect = 8.5
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Frame = -2
Query: 423 GNSCRASAWCWV*VGSGNNAQHLSTSAPNMSKDTPRA-----HSNQAGLSAPEQPLYVEP 259
GN +A+A G G H++ S P+M P A S GL +P P
Sbjct: 270 GNGAQATASGHAAGGGGGAFMHMAGSVPSMEAAMPSATSWFMDSCSYGLPSPPPPATAAV 329
Query: 258 VVSTANMLSAVN*RSLAAGIGRGCRCNSVRNCRNMRPA 145
+T++ L+ + G G N+ NC + PA
Sbjct: 330 AATTSSNLN-------SGGRSSGGDDNATSNCGSAIPA 360
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 327 PCSCSERSWKDAVRYCRNQLTPSTTLMPCSY 419
PCSC ++ KD + LTP+ + PCSY
Sbjct: 221 PCSCGDQ--KDINGSESSLLTPTKSYSPCSY 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,744
Number of Sequences: 37544
Number of extensions: 391350
Number of successful extensions: 1205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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