Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0486
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_325| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.2  
SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)                    29   2.1  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   5.0  
SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
 Frame = +2

Query: 209 ARLLQLTALNMFAVETTGSTYKGCSGAERPAWLECALGVSLLMFGALVERCCALL----- 373
           A LLQ+ A+NMFA++ T    +  +        + AL ++  M  +L+  C ALL     
Sbjct: 30  ATLLQMAAINMFAIDHTTPHDEEETYIRLGTPQDQALNLAFDMVLSLLTACTALLNNQNE 89

Query: 374 PEPTHT-----QHHA---DAL-QLLPSIKVWSDWMLCHSSVWNPPPSFTN 496
           P+  H      Q +A   D L Q LP++ VW DW+  H ++W     F N
Sbjct: 90  PDSYHANDSDFQGNAVLCDTLRQYLPALMVWFDWLSTHRNLWEAIAGFLN 139


>SB_325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +2

Query: 5   LQARQPVIDEQLSTMTSVELNKSFITSYLHVHGKLITKIGM---ETFHESAGLMLRQFRT 175
           L ++ P +    +  T   L   F T   ++HG  I    +   E   E   L L +F  
Sbjct: 145 LPSKGPHVSGVFAPATEPGLTWDFFTPLQYLHGTFIVGFWLLTQEISPEGFALQLSRFTA 204

Query: 176 LLHRQPLPMPAARLLQLTALNMFAVETTGSTYKGCSGA 289
              +   P  +ARL  L A   F    T S+Y   SGA
Sbjct: 205 TKAQDSKPSTSARLSLLKAKKCFENFATCSSYIRGSGA 242


>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
          Length = 884

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 413 QLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLMNIL 556
           +LLP++KV +DW+  +       P   +  VE  +  W  +A L+N+L
Sbjct: 638 RLLPAVKVMADWLRTN-------PDIISTCVESSTSLWSKMASLLNLL 678


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 232
           STS  +     PRA+ ++  L  P  P  + PV ST+ ++S
Sbjct: 437 STSGDSSRGLGPRANQSEVLLRRPRDPATISPVASTSALMS 477


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 327 PCSCSERSWKDAVRYCRNQLTPSTTLMPCSYYP 425
           PC  + R  +  +R CR  L P  TL  C Y P
Sbjct: 491 PCRYTLRPCRYTLRPCRFTLRPCRTLRTCRYVP 523


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 321 AYPCSCSERSWKDAVRYCRNQLTPSTTLMPCSYYP 425
           A P +C ++ +      C +  TP+ TL P   YP
Sbjct: 880 ACPATCDQQCYPQCAPACCDTATPTITLPPAFLYP 914


>SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +3

Query: 309 SALSAYPCS----CSERSWKDAVRYCR 377
           S +S YP      CS+  W DAVR CR
Sbjct: 47  SRISPYPAMLHKYCSDSKWDDAVRLCR 73


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 318  SAYPCSCSERSWKDAVRYCRN 380
            S +     +R WKDA RYC+N
Sbjct: 1543 SCFKFVSEKRPWKDASRYCQN 1563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,405
Number of Sequences: 59808
Number of extensions: 441778
Number of successful extensions: 1247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)