Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0486
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    30   1.1  
Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    28   4.3  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   5.7  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    28   5.7  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   7.5  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   7.5  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   7.5  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   10.0 
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   10.0 

>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 35  QLSTMTSVELNKSFITSYLHVHGKLITKI 121
           Q+  +TS E  +SFI +Y+H  G L +K+
Sbjct: 763 QIGVITSYEGQRSFIVNYMHTQGTLNSKL 791


>Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical
           protein C14B1.8 protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 540 FANQSHESLSSSTLKLVKEGGGF 472
           F+NQS  S+ +S +K++ EG GF
Sbjct: 189 FSNQSANSILNSAMKIISEGDGF 211


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 GPTGCCVTVVSGTHRLPSPIST*NSKAT 521
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 306 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 333


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 GPTGCCVTVVSGTHRLPSPIST*NSKAT 521
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 513 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 540


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 GPTGCCVTVVSGTHRLPSPIST*NSKAT 521
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 513 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 540


>U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical
           protein T14G12.6 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANM 238
           ST AP +S  TP   S  A   APE  +   P + T+ +
Sbjct: 180 STMAPEVSTMTPEGLSTSAETEAPEVTMMTTPAMETSTV 218


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 342  PNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTA 244
            P   +DTP   S+ +    PE P+ VEP + T+
Sbjct: 1472 PLPGEDTPSRKSSSSSAPLPEAPIVVEPPIITS 1504


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 35  QLSTMTSVELNKSFITSYLHVHGKLITKI 121
           Q+  +T  E  +SFI +Y+H  G L +K+
Sbjct: 763 QIGVITPYEGQRSFIVNYMHTQGTLNSKL 791


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 232
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 232
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 232
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 232
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 29  DEQLSTMTSVELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQFRTLL--HRQPLPM 202
           DE+L++ +  E+ K ++T  L    + I  +GM  + +   L  R+   L+   R PL +
Sbjct: 436 DEKLTSKSPTEVLKEYVTKLLAKDSEKIKSVGMTDYVKKHSLEQREELPLVMATRVPLNV 495

Query: 203 PAARL 217
             +RL
Sbjct: 496 HGSRL 500


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 159 CGSSARCCTDSPCRCRP 209
           C    RC TD  CRC P
Sbjct: 386 CNGRGRCDTDGRCRCNP 402


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 159 CGSSARCCTDSPCRCRP 209
           C    RC TD  CRC P
Sbjct: 328 CNGRGRCDTDGRCRCNP 344


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 159 CGSSARCCTDSPCRCRP 209
           C    RC TD  CRC P
Sbjct: 510 CNGRGRCDTDGRCRCNP 526


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +2

Query: 50  TSVELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQPLPMPAARLLQLT 229
           +  +L++  ++      G L+TKIGM+ F   +          L +      A +L++ +
Sbjct: 659 SKAKLHRRAVSYLCDTFGMLVTKIGMDHFESVSERAFGLLYASLSKSETDFSADQLVKFS 718

Query: 230 ALNMFAVE 253
           A+ ++A +
Sbjct: 719 AMFIYAAQ 726


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever shorter
            telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +2

Query: 50   TSVELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQPLPMPAARLLQLT 229
            +  +L++  ++      G L+TKIGM+ F   +          L +      A +L++ +
Sbjct: 816  SKAKLHRRAVSYLCDTFGMLVTKIGMDHFESVSERAFGLLYASLSKSETDFSADQLVKFS 875

Query: 230  ALNMFAVE 253
            A+ ++A +
Sbjct: 876  AMFIYAAQ 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,322
Number of Sequences: 27780
Number of extensions: 309257
Number of successful extensions: 997
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)