Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0486
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 98   EHVNSSL*SSCSTQQKSSW 42
            EH+ SS+ S  ST ++++W
Sbjct: 1332 EHIYSSIDSDYSTLERTAW 1350


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 129 KPFTKVPASCCGSSARCCTDSPCRCRPLDSFS 224
           + F ++  +CC    R       RC+P   F+
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFA 430


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 91  TCSREINNKNRNGNLSRKCR 150
           T S  +NN + NGN +   R
Sbjct: 533 TSSSNVNNNSGNGNTNSSAR 552


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 349 ERSEHEQGYAESALQPGWSL 290
           E  +  Q +AE  LQPG S+
Sbjct: 392 EPPQIRQAFAEETLQPGPSM 411


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 411 CSYYPR*RCGPTGCCVTVVSGTHR 482
           CS YP  R G T  C+      H+
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCHK 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,518
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)