Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0486
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19400.1 68418.m02312 expressed protein                             38   0.004
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    31   0.76 
At3g62770.2 68416.m07051 transport protein-related weak similari...    30   1.0  
At3g62770.1 68416.m07052 transport protein-related weak similari...    30   1.0  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    30   1.0  
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    30   1.3  
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea...    28   4.1  
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m...    27   9.4  

>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
 Frame = +2

Query: 59  ELNKSFITSYLHVHGKLITKIGMETFHE---SAGLMLRQFRTLLHRQPLPM------PAA 211
           E+ K+F   ++H++G L T+  +ETF +   S    LR+  +L   + L +       A 
Sbjct: 315 EMLKAFSIRFVHLNGILFTRTSLETFFDVLASTSSSLREVISLGSAKELTLGIDTSDSAL 374

Query: 212 RLLQLTALNMFAVETTGSTYKGCSGAERPAWLECA---LGVSLLMFGALVERCCALLPEP 382
            ++++  + +F+V  +    +G S AE    +E A   L  S  + G ++E+ C  L +P
Sbjct: 375 FIVRVVTMLIFSVHNSKKETEGQSYAEIVQRVEPARNSLTASFELLGLVIEK-CVQLGDP 433

Query: 383 THTQHHADALQLLPSIKVWSDWMLC 457
           + +         LP + V+ +W+ C
Sbjct: 434 SSS-------YFLPGVLVFVEWLAC 451


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 123 EWKPFTKVPASCCGSSARCCTDSPCRCRP 209
           EWK + KVP++ C + A C   + CR  P
Sbjct: 275 EWKTWLKVPSTKCDTYATCGQFASCRFNP 303


>At3g62770.2 68416.m07051 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 432

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLSAVN*RSLAAGIGRGCRCNS 175
           S S+ +++ D P   SNQ+ LS P   L V P  S  ++    +    A G  RG R   
Sbjct: 43  SFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVLHLSFNQDHACFAVGTDRGFR--- 99

Query: 174 VRNCRNMR 151
           + NC   R
Sbjct: 100 ILNCDPFR 107


>At3g62770.1 68416.m07052 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 307

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 354 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLSAVN*RSLAAGIGRGCRCNS 175
           S S+ +++ D P   SNQ+ LS P   L V P  S  ++    +    A G  RG R   
Sbjct: 43  SFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVLHLSFNQDHACFAVGTDRGFR--- 99

Query: 174 VRNCRNMR 151
           + NC   R
Sbjct: 100 ILNCDPFR 107


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +2

Query: 380 PTHTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLMNILE 559
           PT  Q  A  L+ LPS K  +DW+  H+S  +    F  FN   +  +W+   +LM + E
Sbjct: 187 PTFEQPKAAFLKPLPSQKALTDWVE-HTSA-DGRKYF--FNKRTKKSTWEKPVELMTLFE 242

Query: 560 ILDDKT 577
             D +T
Sbjct: 243 RADART 248


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 377 EPTHTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFN-VELESDS 523
           EP       D + L P   V +DW LCH       P F N + VE ES+S
Sbjct: 130 EPPQCNWFLDEISL-PLTVVDTDWTLCHIFYEKVKPEFGNLHIVESESES 178


>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 5
           (SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
           repeats
          Length = 367

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 299 AWLECALGVSLLMFGALVERCCALLPEPTHTQ 394
           +WL C  G +L ++      C   +P P H Q
Sbjct: 260 SWLVCGQGKNLALWNLPASECVQTIPIPAHVQ 291


>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
            membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
            to SP|O22218 Calcium-transporting ATPase 4, plasma
            membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
            {Arabidopsis thaliana}
          Length = 1030

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 302  WLECALGVSLLMFGALVERCCALLPEPTHTQHHADALQLLPS 427
            WL   L  SL M  A++ +C      P  ++HH D   LLPS
Sbjct: 986  WLLSILIGSLNMIVAVILKCV-----PVESRHHHDGYDLLPS 1022


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,090
Number of Sequences: 28952
Number of extensions: 287385
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)