Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0485
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 85 4e-18
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.31
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.71
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 3.8
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 5.0
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 6.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 8.8
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 24 8.8
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 85.0 bits (201), Expect = 4e-18
Identities = 47/105 (44%), Positives = 63/105 (60%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
+DLSEED +L+ +L +LV + +L +L L +IRTST+SMT+VPKPLKFLR H
Sbjct: 44 EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPH 103
Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLK 435
Y L ++Y+ K AD++SVL M S T K E LK
Sbjct: 104 YFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLK 144
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.31
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 133 EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 291
EE + LQEE+N++ K L + V+ Y L M+ +L + +S++ + +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 0.71
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 202 LYFPALQM-LSNLIRTSTTSMTSVPKPLKFLREHY-PALKQVYEKITDEKTKKFCADVIS 375
++FPA + ++ +I TS + + FL H P L+ +YE + +EK++ F + S
Sbjct: 204 VFFPAAKATITQMIETSIRFLRT------FLDMHIKPQLQHIYESVVEEKSEAFASATSS 257
Query: 376 VLAMGVSGTL 405
+ +S ++
Sbjct: 258 KILSEMSASM 267
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 1.6
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +1
Query: 121 DDLSEEDKR-LQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 297
++LSEED + +EL +L D E D + ++ L+ T +T+ + + +R
Sbjct: 247 EELSEEDMDGMFDELQLLPDDKK-REPDHF-----IMKTLVETLVL-LTATREGREHMRR 299
Query: 298 H--YPALKQVYEKITDEKTKKFCADVISVL 381
YP +++++ + DE+ ++ C ++ +L
Sbjct: 300 RKVYPIIRELHLNVDDEEIREVCDQLVQML 329
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 3.8
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 211 PALQMLSNLIRTSTTSMTSVPKPLK---FLREHYPALKQVYEKITDEKTKKFCADVISVL 381
P++ L I + +M + LK ++ E PAL ++ I +EK K F + I +
Sbjct: 1805 PSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPIA 1864
Query: 382 A 384
A
Sbjct: 1865 A 1865
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 205 YFPALQMLSNLIRTSTTSMTSVPKPLKFL 291
+ PAL S T T S+TS PKP F+
Sbjct: 817 HLPALHKASLSKDTDTNSVTSDPKPHPFV 845
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDK 180
+DL E+KRLQ +LN + +K
Sbjct: 10 NDLDLEEKRLQRQLNEIQEK 29
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 274 KPLKFLREHYPALKQVYEKI 333
K F+RE YPALK ++ +
Sbjct: 563 KIFNFIREQYPALKSGWKSV 582
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 160 LNMLVDKLLGNEVD-----LYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYP 306
LN++++ E D + + AL+ N + + TS + +PLK L +YP
Sbjct: 108 LNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVTSKEILYEPLKDLEANYP 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,530
Number of Sequences: 5004
Number of extensions: 20133
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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