Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0485
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 89 2e-18
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 88 3e-18
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 82 2e-16
08_01_0680 - 5958066-5960253,5960707-5961503 28 2.9
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 27 5.0
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 27 6.6
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 88.6 bits (210), Expect = 2e-18
Identities = 47/105 (44%), Positives = 69/105 (65%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 35 DDLSEEDQALKEQLELYVVRAQDPDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 94
Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLK 435
Y LK +E + + + KK+ AD++SVLA+ T+ +RE LK
Sbjct: 95 YGILKAYFETMPESELKKYMADILSVLAL----TMSAEGERESLK 135
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 87.8 bits (208), Expect = 3e-18
Identities = 43/92 (46%), Positives = 63/92 (68%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 45 DDLSEEDQALKEQLELYVVRAQDTDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 104
Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAMGVS 396
Y LK +E + + KK+ AD++SVLA+ +S
Sbjct: 105 YGTLKAYFETMPESDLKKYMADILSVLALTMS 136
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 82.2 bits (194), Expect = 2e-16
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
DDLSEED L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 40 DDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 99
Query: 301 YPALKQVYEKITDEK-TKKFCADVISVLAMGVSGTLEVAEKRECLK 435
Y LK +E + + K++ AD++SVLA+ T+ +RE LK
Sbjct: 100 YGTLKSYFETMPESSDLKRYMADILSVLAL----TMSAEGERESLK 141
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 220 QMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITD 339
+ L+ L+ T++ + K + FL++ P + + EK+ D
Sbjct: 18 EKLTKLVEDKCTNLVGMSKNIVFLKDELPTMSALLEKLED 57
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 259 MTSVPKPLKFLREHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEV 411
M +P P+ ++ + YP + YEK+ D+ + + V+ + + S EV
Sbjct: 501 MKIMPYPVSYVYDPYPDSPESYEKLVDQVSSQKADAVVGDVTITASRMEEV 551
>07_03_0203 + 15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 217 MLENINRLHCPKAYRLAYSIPPVGVCLPRKDHHLEPLRAQL 95
ML+ + L C + RL Y +PP VCLP H + P + L
Sbjct: 1117 MLQYLQTL-CIEGSRLLY-MPPDIVCLPNLSHLIVPSQTSL 1155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,484
Number of Sequences: 37544
Number of extensions: 115015
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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