Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0485
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)               113   6e-26
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              32   0.23 
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             29   1.3  
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  28   3.8  
SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)                     28   3.8  
SB_28634| Best HMM Match : IncA (HMM E-Value=7.9)                      27   5.0  
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)          27   5.0  
SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_10196| Best HMM Match : Arm (HMM E-Value=8e-12)                     27   6.7  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score =  113 bits (272), Expect = 6e-26
 Identities = 60/104 (57%), Positives = 76/104 (73%)
 Frame = +1

Query: 124 DLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHY 303
           +LSEEDK LQEEL MLV++L    V L+ PAL+ L + IR ST+SMTSVPKPLKFLR HY
Sbjct: 34  ELSEEDKLLQEELTMLVERLKERNVSLHKPALEALRSQIRASTSSMTSVPKPLKFLRPHY 93

Query: 304 PALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLK 435
            ++K+VY+   D + K+F AD+ISVLAM       V+E RECL+
Sbjct: 94  ASMKEVYQGWPDGENKRFLADIISVLAM-------VSEGRECLQ 130


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 124 DLSEEDKRLQEELNMLVDKLLGNEV--DLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 297
           D   ++KRLQ+ELNM+  +LL  E   +     L   +N+I T  +   ++ K ++ LR+
Sbjct: 110 DSKGDNKRLQDELNMVRRRLLEKETENESLLRELNSKNNIISTLKSEKMALQKEIETLRQ 169


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 169 LVDKLLGNEVDLYF---PALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
           L+ K +G  V   F   PAL+ + NL++ S++ ++  P  ++  +EH
Sbjct: 7   LLQKTIGVTVGAQFQTDPALEFVKNLLQVSSSRLSDDPNIIRLAKEH 53


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 142 KRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPL--KFLREHYPALK 315
           K   E  ++ +D LL + V   F   + +S+++ TS    TS  K +  K + E    LK
Sbjct: 291 KAADEHGDITLDDLLDDFVTAIFIGQEQVSSVL-TSVLLETSRHKGIQEKLVEEFNSVLK 349

Query: 316 QVYEKITDEKTKKFCADVI 372
           Q    + D K+ K+C  VI
Sbjct: 350 QDRPTLQDLKSLKYCDLVI 368


>SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)
          Length = 316

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 340 EKTKKFCADVISVLAMGVSGT 402
           EK KKF  D+++   +G SGT
Sbjct: 275 EKAKKFAKDIVNAFKIGTSGT 295


>SB_28634| Best HMM Match : IncA (HMM E-Value=7.9)
          Length = 446

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 181 LLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYE 327
           L GNE D    AL+  + L  T+TTS T     L  L    P  K   E
Sbjct: 29  LYGNEFDKIVDALEEQNKLKTTTTTSSTKSQTALNALTAADPPTKYALE 77


>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
          Length = 406

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 202 NRLHCPKA-YRLAYSIPPVGVCLPRKDH 122
           N LH P+  Y + YS+P +  CL +  H
Sbjct: 143 NELHLPRREYTVPYSVPSITFCLKQVHH 170


>SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 136 EDKRLQEELNMLVDKLLGNEVDLYFPAL-QMLSNLIRTSTTSMTSVPKPLKFLREHYPAL 312
           E ++L E  ++++DK++ NEV+     + Q   + I      +      LK +R+ +  +
Sbjct: 149 EAEQLSETTDVVIDKIVDNEVEARVREITQSYDDQIFVLEEELKGRTVELKRVRDSFNTI 208

Query: 313 KQVYEKITDEKTKKFCADVISVL 381
           K   + +  +       DV++VL
Sbjct: 209 KTANDNLKKQFNFSGTLDVLAVL 231


>SB_10196| Best HMM Match : Arm (HMM E-Value=8e-12)
          Length = 149

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +1

Query: 154 EELNMLVDKLLGNEV--DLYFPALQMLSNLIR 243
           E L  LVD  +GN+   DL+ PALQ+LSN ++
Sbjct: 83  EGLEKLVD-FIGNKEFEDLHVPALQVLSNCLQ 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,276,346
Number of Sequences: 59808
Number of extensions: 136375
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)