Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0485
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 107 3e-24
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.089
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.089
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.089
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 28 3.4
Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z83217-6|CAD59136.1| 128|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical ... 27 5.9
AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical ... 27 5.9
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 27 7.8
U80440-3|AAK21470.2| 380|Caenorhabditis elegans Hypothetical pr... 27 7.8
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 27 7.8
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 107 bits (257), Expect = 3e-24
Identities = 48/89 (53%), Positives = 67/89 (75%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
+++SEED++L+E+LN+LV +L + LY P+L+ + LIR STTSMTSVPKPLKF+R H
Sbjct: 31 EEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90
Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAM 387
Y +K+++ I KK CAD+ISVLAM
Sbjct: 91 YNKMKEIFTSIVAPDVKKLCADIISVLAM 119
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.1 bits (72), Expect = 0.089
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 294
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 672 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 731
Query: 295 EHYPALKQVYEKITDE 342
E Y + EKI E
Sbjct: 732 EKYDRVHTDNEKILGE 747
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.1 bits (72), Expect = 0.089
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 294
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 295 EHYPALKQVYEKITDE 342
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.1 bits (72), Expect = 0.089
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 294
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 295 EHYPALKQVYEKITDE 342
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 27.9 bits (59), Expect = 3.4
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 124 DLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSM----TSVPKPLKFL 291
D SEED L L LVDKL + L +L+ + N + S S+ + L+F
Sbjct: 493 DHSEEDNILLSSLKCLVDKL--ETISLQNISLEDVVNRLSESYKSLLARIVELESELEFE 550
Query: 292 REHYPALKQVYEKITDEKTKKF 357
+E AL++ K + +K +
Sbjct: 551 KEKNRALQETINKSSSADSKLY 572
>Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical
protein C10C6.7b protein.
Length = 223
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -1
Query: 154 PVGVCLPRKD----HHLEPLRAQLFP 89
P+ + +PRKD HHL LRA+L P
Sbjct: 26 PIDIHIPRKDSRHHHHLRHLRARLAP 51
>Z83217-6|CAD59136.1| 128|Caenorhabditis elegans Hypothetical
protein C10C6.7a protein.
Length = 128
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -1
Query: 154 PVGVCLPRKD----HHLEPLRAQLFP 89
P+ + +PRKD HHL LRA+L P
Sbjct: 26 PIDIHIPRKDSRHHHHLRHLRARLAP 51
>AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical
protein W04B5.6 protein.
Length = 179
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 356 NFFVFSSVIFSYTCFNAG*CSLRNF 282
+F F+SV+F Y C C +NF
Sbjct: 110 SFLCFTSVLFVYACIYVKYCKTKNF 134
>AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical
protein E02H9.6 protein.
Length = 460
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 356 NFFVFSSVIFSYTCFNAG*CSLRNF 282
+F F+SV+F Y C C +NF
Sbjct: 110 SFLCFTSVLFVYACIYVKYCKTKNF 134
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYF 210
D+L + + Q E +ML+++ LG+E D+ +
Sbjct: 1071 DELKKAETMWQAEKDMLIERCLGSESDIEY 1100
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYF 210
D+L + + Q E +ML+++ LG+E D+ +
Sbjct: 1073 DELKKAETMWQAEKDMLIERCLGSESDIEY 1102
>U80440-3|AAK21470.2| 380|Caenorhabditis elegans Hypothetical
protein T21E12.2 protein.
Length = 380
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 229 LAFVMLENINRLHCPKAYRLAYSIPPVGV 143
LA ++ NI R H P + +SIPP+GV
Sbjct: 346 LALLLQTNI-RTHLPFSLHFLHSIPPLGV 373
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYF 210
D+L + + Q E +ML+++ LG+E D+ +
Sbjct: 1073 DELKKAETMWQAEKDMLIERCLGSESDIEY 1102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,102,699
Number of Sequences: 27780
Number of extensions: 110655
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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