Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0485
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    89   1e-18
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    88   3e-18
At4g08140.1 68417.m01344 hypothetical protein weak similarity to...    66   7e-12
At4g09350.1 68417.m01544 DNAJ heat shock N-terminal domain-conta...    31   0.44 
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    27   4.1  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    27   7.2  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    27   7.2  
At3g01960.1 68416.m00151 expressed protein                             26   9.5  
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ...    26   9.5  

>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 43/92 (46%), Positives = 62/92 (67%)
 Frame = +1

Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
           +DLSEED  L++ L + V+++     +L   AL+ +   IR ST+SMTSVPKPLKFLR H
Sbjct: 37  EDLSEEDLELKQNLELYVERVQDPNPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPH 96

Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAMGVS 396
           Y  LK  +E + D   KK+ +D++SVLA+ +S
Sbjct: 97  YGTLKAFHETMADSDLKKYLSDILSVLALTMS 128


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 43/92 (46%), Positives = 63/92 (68%)
 Frame = +1

Query: 121 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 300
           +DLSEED +L++ L + V+++     +L   AL+ +   IR ST+SMTSVPKPLKFLR H
Sbjct: 37  EDLSEEDLQLKQNLELYVERVQDPNPELQKIALESMRKEIRDSTSSMTSVPKPLKFLRPH 96

Query: 301 YPALKQVYEKITDEKTKKFCADVISVLAMGVS 396
           Y  LK+ + K+ +   KK  AD++SVLA+ +S
Sbjct: 97  YGVLKEFHAKMAESDLKKMLADILSVLALTMS 128


>At4g08140.1 68417.m01344 hypothetical protein weak similarity to
           SP|Q13200 26S proteasome non-ATPase regulatory subunit 2
           (26S proteasome regulatory subunit S2) (26S proteasome
           subunit p97) (Tumor necrosis factor type 1 receptor
           associated protein 2) {Homo sapiens}
          Length = 84

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 32/63 (50%), Positives = 42/63 (66%)
 Frame = +1

Query: 199 DLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITDEKTKKFCADVISV 378
           DL   AL+ +   IR  T+SMTSVPKPLKFLR  Y  LK  +E + D   KK+ +D++SV
Sbjct: 8   DLQKAALESMRQEIRALTSSMTSVPKPLKFLRPQYVTLKAFHETMADSNLKKYISDILSV 67

Query: 379 LAM 387
           LA+
Sbjct: 68  LAL 70


>At4g09350.1 68417.m01544 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q45552 Chaperone
           protein dnaJ {Bacillus stearothermophilus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 249

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 214 ALQMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITDEKTKKF 357
           A + LS      TTS+     PLK   E +  L++VY  ++DE+T++F
Sbjct: 125 AYRRLSKEYHPDTTSL-----PLKTASEKFMKLREVYNVLSDEETRRF 167


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 307 ALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKREC 429
           AL   Y+K  DE++KK   D++    M    TL VA+ R C
Sbjct: 91  ALVAYYQKYVDEQSKKEIKDIL----MRYDRTLLVADPRRC 127


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 190  CPKAYRLAYSIPPVGVCLPRKDHHLEPLRAQLFPSL 83
            CP+  R  +S   + + L R   HL+P    L P L
Sbjct: 961  CPEPRRRPHSAQKIALVLDRAPKHLQPDLVSLVPKL 996


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 304 PALKQVYEKIT---DEKTKKFCADVISVLAMGVSGTLEVAEKRE 426
           P LK+ + ++T   D+   K C DVIS +  G +     A  RE
Sbjct: 670 PKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGTAAESAFASMRE 713


>At3g01960.1 68416.m00151 expressed protein
          Length = 138

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 127 LSEEDKRLQEELNMLVDKLLGNEVD 201
           L+ E K ++++LNM+ +KL+G  ++
Sbjct: 74  LAPEGKDMEKKLNMMAEKLIGRGIN 98


>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 708

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 217 LQMLSNLIRTSTTS--MTSVPKPLKFLREHYPALKQVYEKITDEKTKKFCADVISVLAM 387
           L   S+L+R   T   + + P P   L +H+  L Q+ +    E  K   A+V+S++ M
Sbjct: 184 LPQQSSLLRRPFTRELINTTPLPKPVLLQHFQQLSQLEKNRMFEIAKNAVAEVMSLIQM 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,622,878
Number of Sequences: 28952
Number of extensions: 100597
Number of successful extensions: 341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)