Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0483
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    27   0.78 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   1.0  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   1.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   1.8  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   3.1  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    24   5.5  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    23   7.3  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    23   7.3  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    23   9.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    23   9.6  

>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 147 QHTKRTYS*TPRIKRAIR*LTKH--TQLCPF*NNIKKKNICTSCRI 16
           QHT R +  +P+I+ ++R + K    ++C F N     N C +C +
Sbjct: 76  QHTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCRNCGV 121


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 287 KASPIQIDLTSQGHYYYDLXYTPSTRNKNY 198
           K+  + +DL S    ++D  Y PS  NKNY
Sbjct: 203 KSDTLDMDLESHNMTFHD--YEPSIENKNY 230


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 116 RESNARSDSSQSTHNYVPSKTILKKKTFVPRAEFL 12
           ++ N +   +  +HN+V +K IL   TF+    FL
Sbjct: 6   KKKNEKKTKNPYSHNHVNTKLILPHNTFLTNILFL 40


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 263  LTSQGHYYYDLXYTPSTRNK 204
            L  QGH  Y+   +PS RNK
Sbjct: 952  LNQQGHEQYNFSLSPSIRNK 971


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 281 SPIQIDLTSQGHYYYDLXYTPST 213
           +PI ID+T  GH  + L Y  S+
Sbjct: 65  APIVIDITLNGHQVFHLAYDGSS 87


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 137 SVLIHRHRESNARSDSSQSTHNYVPSKTILKKKTF 33
           S++   +R    R+D++ +TH +V S  I+    F
Sbjct: 463 SIVTSYNRNFTGRNDANPATHAFVTSPDIVTAMVF 497


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 122 RHRESNARSDSSQSTHNYVPSKT 54
           +H+ S+ R+DS  S +   PSK+
Sbjct: 292 QHQNSSGRTDSFHSLNTETPSKS 314


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 299 VSAWKASPIQIDLTSQGHY 243
           V+AW  +P Q+D+  QG +
Sbjct: 231 VAAWSRAPPQLDVRPQGAF 249


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 155 LSNNTRSVLIHRHRESNARSDSSQSTHNYVPSK 57
           L  N  SV +H+  +   R  S +S  N  P+K
Sbjct: 416 LPENVYSVFVHQRPDIQFRGCSIESPANLFPNK 448


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 155 LSNNTRSVLIHRHRESNARSDSSQSTHNYV 66
           +  N + +L+H  + + A S S +  H Y+
Sbjct: 261 IEKNLKLILLHLAKSTGASSSSVEKIHAYL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,801
Number of Sequences: 5004
Number of extensions: 17618
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)