Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0483
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_917| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   0.53 
SB_20190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.92 
SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)                   27   3.7  
SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.5  
SB_13426| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 144 HTKRTYS*TPRIKRAIR*LTKHTQLCPF*NNIKKKNICTSCRIP 13
           H K T S   R+  AI  +    QLC       K  +CT CR+P
Sbjct: 94  HRKPTNSAPLRLSHAIESIPDEVQLCISGIPGAKYGVCTKCRVP 137


>SB_20190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 125 HRHRESNARSDSSQSTHNYVPSKTILKKKTFVP 27
           HR +    +  S Q + N +  K +LKKKT +P
Sbjct: 69  HRRQHQKRKRKSKQKSSNEMKVKQLLKKKTKIP 101


>SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)
          Length = 855

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 131 LIHRHRESNARSDSSQSTHNYVPSKT-ILKKKT 36
           L+H  R SN  S S  STH Y P K  ++KKK+
Sbjct: 39  LVHCQRVSN--SVSPPSTHLYFPQKAHLIKKKS 69


>SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 284 ASPIQIDLTSQGHYYYDLXYTPSTRNK 204
           ASP Q  L   G Y Y L Y P+T NK
Sbjct: 39  ASPYQKALDETG-YNYTLHYEPNTTNK 64


>SB_13426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 20  RHEVQMFFFLILF*KGHSCVCFVSYRIARLIL 115
           ++EVQ+F    ++   H+C C+  +  +RL L
Sbjct: 12  KNEVQVFSLYAIYICAHNCNCWFVFHPSRLAL 43


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 238  MISXIPLVQEIKIT---LQFSINNLEI*SKFCLTTHE 137
            ++S  PL Q + +T   +QF    L + SK C  +HE
Sbjct: 953  VLSSAPLPQSVLVTPLSVQFVFTRLVLASKICKASHE 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,176,952
Number of Sequences: 59808
Number of extensions: 127932
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)