Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0483
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    26   5.8  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    26   5.8  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    23   7.6  

>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 293 AWKASPIQIDLTSQGHYYYDLXYTPSTRNKNYVTIFYK*FRDLE*ILSNNTRS 135
           A + +PI    +SQ HY       P    KNY  I Y    DL    S NT+S
Sbjct: 181 AKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNY-QITYTPLDDLTDQKSTNTKS 232


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 293 AWKASPIQIDLTSQGHYYYDLXYTPSTRNKNYVTIFYK*FRDLE*ILSNNTRS 135
           A + +PI    +SQ HY       P    KNY  I Y    DL    S NT+S
Sbjct: 481 AKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNY-QITYTPLDDLTDQKSTNTKS 532


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 269 IDLTSQGHYYYDLXYTPSTRNKNYVTIFYK 180
           I++   G  YY L +TP     + +++ YK
Sbjct: 495 IEMRDLGQQYYQLKFTPKMEGIHTLSVMYK 524


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 269 IDLTSQGHYYYDLXYTPSTRNKNYVTIFYK 180
           I++   G  YY L +TP     + +++ YK
Sbjct: 444 IEMRDLGQQYYQLKFTPKMEGIHTLSVMYK 473


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 269 IDLTSQGHYYYDLXYTPSTRNKNYVTIFYK 180
           I++   G  YY L +TP     + +++ YK
Sbjct: 442 IEMRDLGQQYYQLKFTPKMEGIHTLSVMYK 471


>AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical
           protein W03G9.9 protein.
          Length = 215

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 140 RSVLIHRHRESNARSDSSQSTHNYVPSKTILKKKTF 33
           R  L  +   SNA SDSS ST    PSK  +KK  F
Sbjct: 47  RRKLSRQKLPSNAPSDSSSSTATTTPSK--IKKFVF 80


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 147 VRQNLL*ISKLFIENCNVIFIS 212
           V+Q  L + KLFIEN NV  +S
Sbjct: 239 VKQTKLVLEKLFIENSNVDLLS 260


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 152 SNNTRSVLIHRHRESNARSDSSQSTHNY 69
           S++  S+  H H+  N  S SS S H+Y
Sbjct: 131 SSSQSSLSSHPHQHHNHHSSSSSSYHDY 158


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 83   STHNYVPSKT-ILKKKTFVP 27
            STHNYVP  T I++K    P
Sbjct: 1334 STHNYVPPVTKIIEKNASDP 1353



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 119  HRESNARSDSSQSTHNYVPS 60
            H ES  + D   S H YVPS
Sbjct: 1304 HTES--KDDFKHSKHGYVPS 1321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,063,018
Number of Sequences: 27780
Number of extensions: 96540
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)