Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0483
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   1.4  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   7.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 158 ILSNNTRSVLIHRHRESN-ARSDSSQSTHNYVPSKTILKKKTFVPRAEFLQPG 3
           ++  +T+S L H H  S  ARS SSQ+  +  P    L   T    A  L  G
Sbjct: 662 VIVQHTQSQL-HLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEG 713


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 75  QLCPF*NNIKKKNICTSCRI 16
           Q C F +NI K+N+  +  I
Sbjct: 114 QACGFIDNIDKRNLSVTSMI 133


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 FISCTRGIXEIIVIMTLRREVDLY 275
           +I C     +I+  +TLRR+   Y
Sbjct: 216 YICCEEPYPDIVFNITLRRKTLFY 239


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 300 CVCXESVPNTNRP 262
           CVC    P  +RP
Sbjct: 104 CVCMRKCPRRHRP 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,130
Number of Sequences: 438
Number of extensions: 1384
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)