Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0482
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    28   4.9  
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508...    27   8.5  
03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141...    27   8.5  

>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 7   PRLQEFGTRELVSKHRQSLINNKYNVDCKQYYSTNKYLIFTKISSY 144
           P++ +FG+ EL+ K +   ++  Y VD      TNKY + + + SY
Sbjct: 553 PKVSDFGSSELILKFKHVCVDKNY-VD-PVCILTNKYTMESDVYSY 596


>05_01_0573 -
           5083030-5083151,5084639-5084738,5084790-5084829,
           5085122-5085567
          Length = 235

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 402 PTHA*SHPLGLPVNKDRKKCYAVKLAEQKRQWKQNWPIVSNTRRAHCGLGECVITINSY 578
           P+ +  + LG+P+   R  C A     ++R W+   P  +N  R    LG  ++    Y
Sbjct: 105 PSSSSQYLLGIPIAASR--CMATNEEARRRWWRGRQPAGANRSRIRRALGASLLARRVY 161


>03_01_0174 +
           1410322-1410345,1410458-1410760,1411914-1412034,
           1412147-1412321,1412417-1412487,1412586-1413268
          Length = 458

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 400 HAKCLNPTKXXXXXIVYFYNIVLSRLTHVNYGSYKVRCAICRTI 269
           HAK L  T+     ++Y  NI++S +T V+  S+ +    C  +
Sbjct: 167 HAKELTYTRGYLLELLYSNNIIISNVTFVDSPSWNLHPTYCTNV 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,480
Number of Sequences: 37544
Number of extensions: 253429
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)