Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0482
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.8  
SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)                     28   6.5  
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   8.6  
SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)                  27   8.6  

>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 410  CLKSPVRSSCKQRPKKMLCSKVSGTKTAMETKLAHSFKHATCTLRLG 550
            C  S  R++C QR K  +CS+V     A++T +  +    T T  LG
Sbjct: 1466 CCFSGCRNTCVQREKDDICSRVIDLAIAVDTSM--NMDRCTWTRNLG 1510


>SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)
          Length = 111

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 289 CAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYE 161
           C   +  + +   + + P F ++   +L+ +PA  F+ C C+E
Sbjct: 69  CVSKQAQQTQAKKSTHRPTFNQTFTFKLRGAPADLFNDCVCFE 111


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = -2

Query: 334 LSRLTHVNYGSYKVRCAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYEIC 155
           LSR   V Y        +C +    +   CYS L R  I+    +SP    SM  CY I 
Sbjct: 26  LSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYSYLSP----SMIVCYSIL 81

Query: 154 LRNYSLIFL*K*DIYWCCSIVYNLHYI 74
            R+  + +      Y+ CS+     Y+
Sbjct: 82  SRSRFVCY-----SYFSCSLFVCYSYL 103


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 471 KLAEQKRQWKQNWPIVSNTRRAHCGLGE 554
           KLAE+KR+WK++    S++++A    GE
Sbjct: 45  KLAEEKRKWKEDID-TSDSKKARLATGE 71


>SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)
          Length = 120

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 450 RKKCYAVKLAEQKRQWKQN 506
           +K  Y V+L E++++WKQN
Sbjct: 17  KKNAYLVELIERQKKWKQN 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,960
Number of Sequences: 59808
Number of extensions: 336886
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)