Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0482
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17310.1 68415.m02000 F-box family protein contains F-box dom...    30   1.3  
At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /...    29   2.3  

>At2g17310.1 68415.m02000 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = +1

Query: 40  VSKHRQSLINNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVLLL 219
           VSKH  SL N+K  ++     S  +++I T    Y+   I HN+     +L E      +
Sbjct: 26  VSKHWNSLFNDKTFINNHLSRSRPEFIILTNSKIYSVDIIDHNNIDPTIRLHE------I 79

Query: 220 CSYETRVSNTRLKSPFVSSCKLHIVLCNYR 309
            +Y+     T L    +++C    +  NYR
Sbjct: 80  PTYDIHSRGTDLNRTIINTCD-EFLFYNYR 108


>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Brassica napus]
           GI:1212786; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 343 NIVLSRLTHVNYGSYKVRCAICRT--IRKETSNAC 245
           N+++S LT +N  +Y +    CR   I + T+N C
Sbjct: 189 NVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTC 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,694
Number of Sequences: 28952
Number of extensions: 219542
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)