Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0479
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   271   3e-73
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   2e-34
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   8e-08
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.050
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      32   0.27 
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.9  
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   1.9  
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)                   28   4.4  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   7.6  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  271 bits (664), Expect = 3e-73
 Identities = 125/150 (83%), Positives = 140/150 (93%)
 Frame = +3

Query: 93  GLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKS 272
           GLVGVDQFLVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL RLAKS
Sbjct: 445 GLVGVDQFLVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKS 504

Query: 273 DPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 452
           DPMVQ   EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSYRE V+++S+Q+
Sbjct: 505 DPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRECVSDKSNQM 564

Query: 453 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEG 542
           CLSKSPNKHNRLFM A P+ + LPEDID+G
Sbjct: 565 CLSKSPNKHNRLFMTAGPLEEKLPEDIDDG 594



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 26  RGILMMGRYVEAIEDVPSGNMV 91
           R ILMMGRY+E I DVP GN+V
Sbjct: 423 RTILMMGRYIEPIVDVPCGNIV 444


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  142 bits (343), Expect = 2e-34
 Identities = 67/161 (41%), Positives = 107/161 (66%), Gaps = 3/161 (1%)
 Frame = +3

Query: 75  PLVTWCGLVGVDQFLVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 245
           P   W  + GVDQ +VKT TIT  +    A+  + +KF+    +++AVEP NP++LPK++
Sbjct: 413 PAGNWVLIEGVDQPIVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKML 472

Query: 246 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 425
           +GL+++ KS P++    EESGEH++ G GEL+L+  + DL   ++ I IK +DPV+++ E
Sbjct: 473 DGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCE 532

Query: 426 TVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 548
           TV E S   C +++PNK N++ M A+P+  GL EDI+  +V
Sbjct: 533 TVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKV 573


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +3

Query: 309 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 431
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 228 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 350
           DL +  + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 36  DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
 Frame = -2

Query: 445 SDSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCT---MG 275
           +  SA  S + +TG D  IG  A S +   R  +  +S    T  +P  SL   T     
Sbjct: 548 ASESAAFSLHSSTGGD--IGTMASSQALFERLRATRTSKVSDTRNTPSPSLSSDTPSPAS 605

Query: 274 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKVVMVP-VLTKN*STPT 98
             L  ++         AG+  S+A+ TT   +N++TF      K V VP  L+ + S+P 
Sbjct: 606 PSLLEQIEGDLP-SHLAGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPA 664

Query: 97  RP 92
            P
Sbjct: 665 SP 666


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 390 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 521
           I+K+     Y+E + +E++ L   +  N+H+ +   AQ  P GL
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGL 259


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 292  IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 185
            I C MG D   RLR ST L R   F+GS     T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 274  SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 140
            S+  RR +P T  GR+  FLG+ + R T    NF+ F+   F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 276 PMVQCINEESGEHIVAGAGELHLEICLKDLEE 371
           P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 264 AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 377
           AK DP +    C NE+SGEH  +  GE +L I ++ +++D+
Sbjct: 7   AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
          Length = 165

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 359
           ++V+ L   A  DP  + +N  S  H  A  G+LH   CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = -2

Query: 388 GMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGS 209
           G ++ S S  +R      +P P T      S +    GS +     P+T+  R++    +
Sbjct: 181 GSRSSSISPGMRSSLGSIAPPPRTSTPRSRSTLRSRAGSRIRTPSTPTTTSSRASSRESA 240

Query: 208 TATRTTGDTLNFIT 167
             TRTT  T   +T
Sbjct: 241 RGTRTTTTTKKCVT 254


>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +3

Query: 126 TGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEES 305
           TGT    + +    V        V V V P     LP      KR+   +P     N + 
Sbjct: 279 TGTFACRRVSRTTDVSNLEEPRSVAVTVNPGLLVVLPTCETCGKRVDMMNP-----NRKK 333

Query: 306 GEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR-ETVAEESDQLCL 458
           GE  V G  E    +C + +  DH C      D +   +  T  ++ D +CL
Sbjct: 334 GEEHVCG--EYKCSVCKEVVPPDHLCYLTVGDDALPKKKNSTDDDDDDSMCL 383


>SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +3

Query: 210 EPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIP 389
           E K   +L ++     RL   D  V+   +  G H ++G+GE  LE   + L E    + 
Sbjct: 273 EAKIQVELAEIPYIRSRLV-GDDSVEFDQQRGGTHFISGSGETQLERERRVLTERELKLK 331

Query: 390 IKKSDPVVSYRETVAEE 440
            KK + +  +RE V  E
Sbjct: 332 -KKLEALRKHREHVRHE 347


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 373  TMLAFQSRSLTLSCRTVRP*L--RNRTSSVSQSRPTSTTV 486
            T+    SR +TLSC+T R  +  RN +S V+ +R TS  V
Sbjct: 1282 TLSCNTSRDVTLSCKTSRGVILARNTSSGVTLTRNTSRGV 1321


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 504 PMPDGLPEDIDEGRV 548
           P+PDG+ E+IDEG++
Sbjct: 721 PVPDGIYEEIDEGQI 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,060
Number of Sequences: 59808
Number of extensions: 410242
Number of successful extensions: 1141
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)