Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0479
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.054
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 109 STPTRPHHVTRGHILNSFNITSHHKDSSCRIP 14
           STP  PHH T GH  +  + T HH  S    P
Sbjct: 410 STPG-PHHHTMGHGHSHIHATPHHHHSHAATP 440



 Score = 24.2 bits (50), Expect = 0.88
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 137 HHFQECPQHEGDEIQCITSRACRC 208
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 68   DVPSGNMVWSCW 103
            + P GNM W  W
Sbjct: 1012 NTPKGNMQWKIW 1023


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 457 SQSRPTSTTVCS*RLSPCLMVCQRT 531
           +Q+ P +TT     + PC  +C+ T
Sbjct: 218 AQNGPFNTTTIFVPVKPCPWICELT 242


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 256 NVWLNLTPWCSV 291
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,650
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)