Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0479
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 207 4e-54
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 145 1e-35
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 143 8e-35
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 143 8e-35
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 111 4e-25
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 65 3e-11
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 56 2e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 56 2e-08
At2g47500.1 68415.m05929 kinesin motor protein-related 30 0.89
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 1.2
At1g14940.1 68414.m01785 major latex protein-related / MLP-relat... 29 1.5
At1g70890.1 68414.m08179 major latex protein-related / MLP-relat... 29 2.7
At1g70160.1 68414.m08073 expressed protein similar to hypothetic... 29 2.7
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 29 2.7
At5g17300.1 68418.m02026 myb family transcription factor similar... 28 3.6
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 28 4.7
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 27 6.2
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 27 6.2
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 27 6.2
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 27 8.3
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 27 8.3
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 27 8.3
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 27 8.3
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 207 bits (505), Expect = 4e-54
Identities = 103/154 (66%), Positives = 124/154 (80%), Gaps = 3/154 (1%)
Frame = +3
Query: 96 LVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAK 269
+VG+DQF+ K T+T K +AH ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAK
Sbjct: 454 MVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAK 513
Query: 270 SDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESD 446
SDPMV C EESGEHIVAGAGELHLEICLKDL++D I KSDPVVS+RETV + S
Sbjct: 514 SDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRST 573
Query: 447 QLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 548
+ +SKSPNKHNRL+M+A+PM +GL E ID+GR+
Sbjct: 574 RTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRI 607
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 26 RGILMMGRYVEAIEDVPSGNMV 91
R ++ MG+ E +EDVP GN V
Sbjct: 431 RTVIWMGKRQETVEDVPCGNTV 452
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 145 bits (352), Expect = 1e-35
Identities = 70/161 (43%), Positives = 107/161 (66%), Gaps = 3/161 (1%)
Frame = +3
Query: 75 PLVTWCGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 245
P +W + GVD ++KT T+ ++ + + +KF+ PVV+ A EP NP++LPK+V
Sbjct: 545 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALKFNTLPVVKTATEPLNPSELPKMV 604
Query: 246 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 425
EGL++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ E
Sbjct: 605 EGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIIKDLRELYSEVQVKVADPVVSFCE 664
Query: 426 TVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 548
TV E S C +++PNK N+L M A+P+ GL EDI+ G V
Sbjct: 665 TVVESSSMKCFAETPNKKNKLTMIAEPLDRGLAEDIENGVV 705
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 143 bits (346), Expect = 8e-35
Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 3/161 (1%)
Frame = +3
Query: 75 PLVTWCGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 245
P +W + GVD ++KT T+ ++ + + ++F+ PVV+ A EP NP++LPK+V
Sbjct: 559 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMV 618
Query: 246 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 425
EGL++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ E
Sbjct: 619 EGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 678
Query: 426 TVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 548
TV E S C +++PNK N++ M A+P+ GL EDI+ G V
Sbjct: 679 TVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVV 719
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 143 bits (346), Expect = 8e-35
Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 3/161 (1%)
Frame = +3
Query: 75 PLVTWCGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 245
P +W + GVD ++KT T+ ++ + + ++F+ PVV+ A EP NP++LPK+V
Sbjct: 559 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMV 618
Query: 246 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 425
EGL++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ E
Sbjct: 619 EGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 678
Query: 426 TVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 548
TV E S C +++PNK N++ M A+P+ GL EDI+ G V
Sbjct: 679 TVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVV 719
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 111 bits (266), Expect = 4e-25
Identities = 49/117 (41%), Positives = 80/117 (68%)
Frame = +3
Query: 102 GVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPM 281
G+ ++ K+ T+++ +N + M+F VSP +RVA+EP +PAD+ L++GL+ L ++DP
Sbjct: 508 GLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPF 567
Query: 282 VQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 452
V+ GEH++A AGE+HLE C+KDL+E A + ++ S P+VSYRET+ + L
Sbjct: 568 VEITVSARGEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +3
Query: 132 TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESG 308
T++ +N ++ M F PV++VA+EPK AD+ K+ GL +LA+ DP +EE
Sbjct: 475 TLSDPENPVVLERMDFP-DPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMN 533
Query: 309 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE 437
+ ++ G GELHLEI + L+ + + P V+YRE++++
Sbjct: 534 QTVIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISK 575
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Frame = +3
Query: 189 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 365
PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ +
Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520
Query: 366 EEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSKS--PNKHNRLFMKAQPMPDGLPEDI 533
++ + P V++RET+ + E D L +S ++ R+ +P+P G E
Sbjct: 521 RREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGGAGQYGRVTGYVEPLPPGSKEKF 579
Query: 534 D 536
+
Sbjct: 580 E 580
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Frame = +3
Query: 189 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 365
PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ +
Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520
Query: 366 EEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSKS--PNKHNRLFMKAQPMPDGLPEDI 533
++ + P V++RET+ + E D L +S ++ R+ +P+P G E
Sbjct: 521 RREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGGAGQYGRVTGYVEPLPPGSKEKF 579
Query: 534 D 536
+
Sbjct: 580 E 580
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 147 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 254
+N N S+S +VR + K P D+PKL+E L
Sbjct: 218 ENDSNKLSSPSSLSTLVRAVLSDKKPEDVPKLIESL 253
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 438 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 533
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At1g14940.1 68414.m01785 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294060] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 155
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 38 MMGRYVEAIEDVPSGNMVWSCW-SRSVLSQDWYHHHFQECPQHEGD 172
M G YV + S + W + + + QD HH Q C H+GD
Sbjct: 3 MSGTYVAEVPLKGSAEKHYKKWRNENHVFQDAVGHHIQGCTMHDGD 48
>At1g70890.1 68414.m08179 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294062] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 158
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 509 HGLSLHEQTVVLVGRL*ETELVRFLSYG-LTVRHDRVRLLDWNASMVLLKILKTDLKMEF 333
HG LHE VG + + +++ G LTV +++ +D +++ K+L+ DL E+
Sbjct: 44 HGCELHEGDWGKVGSI---VIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEY 100
Query: 332 SS 327
S
Sbjct: 101 KS 102
>At1g70160.1 68414.m08073 expressed protein similar to hypothetical
protein GI:4455225 from [Arabidopsis thaliana]
Length = 523
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/81 (25%), Positives = 30/81 (37%)
Frame = +3
Query: 294 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 473
NE+ E IV + E+ LKD + D + T A E + L K
Sbjct: 272 NEKGEEIIVVIPWDEWWELTLKDNSNPQVALLPLHPDIRAKFNNTAAWEYARSMLGKPYG 331
Query: 474 KHNRLFMKAQPMPDGLPEDID 536
HN +F + D P +D
Sbjct: 332 YHNMIFSWIDTLGDNYPPPLD 352
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 65 EDVPSGNMVWSCWSRSVLSQDWYHHHFQEC 154
E+V GN W W S+ ++ H EC
Sbjct: 729 EEVNGGNKCWLVWQGSIGKPSFHRFHVHEC 758
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 442 DSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPAT 317
D+ + S T GS+ L + + S +RSL +S S PA T
Sbjct: 154 DTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALT 195
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 291 INEESGEHIVAGAGELHLEICLKDLEEDH 377
I EE G G G+ ICL++ E+DH
Sbjct: 63 IKEEEGGREEEGGGKRFCPICLEEYEDDH 91
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 324 GAGELHLEICLKDLEEDHACIPIKK 398
G E+ ICL++LE+ H I IKK
Sbjct: 111 GFDEIGCSICLEELEDGHEIIRIKK 135
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 428 GLTVRHDRVRLLDWNASMVLLKILKTDLKMEFSSTSDNV 312
G TV+ DRV W +++ +++TD +EF N+
Sbjct: 348 GGTVKEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDPGNL 386
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 366 EEDHACIPIKKSDPVVSYRETVAEESD--QLCLSKSPNKHNRLFMKAQPMPDGL 521
EE + +K + S ++TV+EE D + LS P K +K Q P+G+
Sbjct: 25 EEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVKRQQKPNGV 78
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 PVVRVAVEPKNPADLPKLVEGLKRLAK-SDPMVQCINEESGEHIV 320
P+++ V P N AD+ VE +K + S+ + +C+ EE E+++
Sbjct: 63 PIIKKVVVP-NRADIKTSVEEVKAIIDDSEALYECLIEEGEEYLL 106
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 342 LEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 521
+E KD + I + V + + E + LCL PN+ + + A+ +P L
Sbjct: 13 VEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPEL 72
Query: 522 PE 527
PE
Sbjct: 73 PE 74
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 198 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 335
+VA+ +P D+ K+ E L RLA D + +S E + G +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 198 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 335
+VA+ +P D+ K+ E L RLA D + +S E + G +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 399 SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 527
++ +V + +T E + LCL PN+ + + + +P LPE
Sbjct: 31 TNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVEEVPPELPE 73
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 27.1 bits (57), Expect = 8.3
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = -2
Query: 457 RQSWSDSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTM 278
RQSW T +T S ++ A + + + S+ SPAP++ +SL++C
Sbjct: 1939 RQSW-----TTMPTETARSQAVLAADAIPVLQLMMK-SKLKSPAPSSFHERGNSLLNCLP 1992
Query: 277 GSDLARRLRPSTSLGRSAGF 218
GS L ++ +L RS F
Sbjct: 1993 GS-LTVAIKRGDNLKRSNAF 2011
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,695
Number of Sequences: 28952
Number of extensions: 270220
Number of successful extensions: 873
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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