Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0475
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   3.9  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   6.8  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    24   9.0  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   9.0  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    24   9.0  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    24   9.0  

>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 37  SEHECWS-VR*KCWRLVKEMKNLAMFVYVSTAYSNTSQSILEEKLYPQSLNLNEI 198
           S H  W+ +  +    +K +++  +  Y+ST  S+T   I  E + P +  LNE+
Sbjct: 56  STHPEWAELADRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTELNEL 110


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 296 AFVYAYVFGWLPINFIISSLSL 231
           AF+ AYVF  L   FI  SL+L
Sbjct: 235 AFIQAYVFAILTCGFINDSLNL 256


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 133 SNTSQSILEEKLYPQSLN-LNEIQK 204
           SN  Q  ++E  YP SLN L+EI K
Sbjct: 28  SNDVQKAIDEVHYPDSLNDLSEISK 52


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 118 VSTAYSNTSQSILEEKLYPQSLNLNEIQKFAEEHYILGKDN 240
           VST  +N     L   L       N    + EEHY L K N
Sbjct: 430 VSTVANNKRLRSLSTYLTDSRRKANRFLSYDEEHYFLQKKN 470


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 127 AYSNTSQSILEEKLYPQSLNLNEIQKFAEE 216
           A SN S + +   L   S N+NE++KF +E
Sbjct: 204 ALSNISFNYVYYTLENDSENINEVKKFEDE 233


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 112 VYVSTAYSNTSQSILEEKLYPQSLNLNEIQKF 207
           + + TAY   +QSI    L+P S++ N ++ +
Sbjct: 257 INMHTAYLEINQSINLSLLWPMSVSTNTLENY 288


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 289 CMHMCLGGYL*ILSFHRCLYLIYNVLQRTSVFRLDLGTEDKVFLL 155
           C H+C GG+L +   HR   +  N+      F   +G +  VF L
Sbjct: 113 CSHICNGGFL-VSPSHRSKGIGRNLANAYLYFAPRIGFKSSVFNL 156


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 76  RLVKEMKNLAMFVYVSTAYSNTSQSILEEKL 168
           +L  ++ NLAM + +ST + N   +ILE  +
Sbjct: 105 KLQTQVYNLAMRIALSTRFINNELTILENPI 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,905
Number of Sequences: 5004
Number of extensions: 34888
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)