Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0475
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 38 0.005
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 30 0.95
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 29 1.3
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 29 1.3
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 29 2.2
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886... 28 2.9
09_04_0010 - 13686424-13686822 28 2.9
01_06_1212 + 35459675-35460073 28 2.9
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423... 28 3.8
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 27 6.7
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 27 6.7
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 37.5 bits (83), Expect = 0.005
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Frame = +1
Query: 76 RLVKEMKNLAMFVYVSTAY-SNTSQSILEEKLYPQSLNLNE--IQKFAEEHYILGKDNDE 246
+ K+ NL MF+++STA+ S + +L EK++ L E A E ++ E
Sbjct: 556 KFAKKCANLKMFLHISTAFVSGEQEGLLLEKVFQIGETLKEGCHLDIAAELQLVESVKAE 615
Query: 247 MIKFIGNH----PNTYAYTKALAENLVAEEHGEXXXXXXXXXXXXXXXEEPVRGFVD 405
+ PNTY +TKA+ E LV E +P+ G+++
Sbjct: 616 LTHSTNARQFGWPNTYVFTKAMGEMLVGHFGRELPVVIIRPSIVSSIYHDPLPGWIE 672
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 29.9 bits (64), Expect = 0.95
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 271 PNTYAYTKALAENLVAEEHGEXXXXXXXXXXXXXXXEEPVRGFVD 405
PNTY +TKA+ E L+ G+ +EP+ G+++
Sbjct: 234 PNTYVFTKAMGEMLLGHLRGDLPVVIIRPSIITSILKEPLPGWME 278
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 RLVKEMKNLAMFVYVSTAYSNTSQ-SILEEKLYPQSLNLNE 195
+L K+ + L +F++VSTAY+ Q +++E+ + + L E
Sbjct: 150 QLAKKCRGLKVFLHVSTAYAGGEQEGLIQERAFEEGWALRE 190
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +1
Query: 76 RLVKEMKNLAMFVYVSTAYSNT--SQSILEEKLYPQSLNLNEIQKFAEEHYILGK-DNDE 246
RL+K + LA + Y T SQ + + L P+ ++++ +++FA+E YI+ K +
Sbjct: 251 RLLKFERKLASGSF-GDLYHGTYCSQDVAIKVLKPERVSVDMLREFAQEVYIMKKVRHKN 309
Query: 247 MIKFIG 264
+++FIG
Sbjct: 310 VVQFIG 315
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 28.7 bits (61), Expect = 2.2
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Frame = +1
Query: 76 RLVKEMKNLAMFVYVSTAYSNTSQS-ILEEKLYPQSLNLNE---------IQKFAEEHYI 225
+L K+ NL +F++VSTAY +S +++E+ + L E ++ E+
Sbjct: 145 QLAKKCANLEVFLHVSTAYVCGERSGVVQERALREGETLREGTYLDIETELRLVGEQRQQ 204
Query: 226 LGKDND-----EMIKFIG----NH---PNTYAYTKALAENLVAEE 324
L D + +K +G H PNTY +TKA+ E ++ E+
Sbjct: 205 LEDAGDAKAERKAMKDLGLARARHFGWPNTYVFTKAMGEMMLQEQ 249
>09_06_0146 +
21186889-21187178,21187321-21187435,21188595-21188686,
21188839-21188952,21189139-21189193,21189348-21189458,
21190226-21190279,21190362-21190537,21190623-21190730,
21191332-21191405,21191500-21191675,21192169-21192264,
21192534-21192614,21192713-21192766,21193246-21193380,
21193453-21193533
Length = 603
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 142 SQSILEEKLYPQSLNLNEIQKFAEEHYILGK-DNDEMIKFIG 264
SQ + + L P+ +N + ++FA+E YI+ K + +++FIG
Sbjct: 343 SQDVAIKVLKPERINADMQREFAQEVYIMRKVRHKNVVQFIG 384
>09_04_0010 - 13686424-13686822
Length = 132
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 10 GTRRSFKIYSEHECWSVR*KCWRLVKEMKNLAMFVYVSTAYSNTS 144
GTR + +H WS RL++ ++ +FVY +T + S
Sbjct: 87 GTRSGLYVVRDHRIWSPPCSGHRLLRLLRRRRLFVYSATELGSPS 131
>01_06_1212 + 35459675-35460073
Length = 132
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 10 GTRRSFKIYSEHECWSVR*KCWRLVKEMKNLAMFVYVSTAYSNTS 144
GTR + +H WS RL++ ++ +FVY +T + S
Sbjct: 87 GTRSGLYVVRDHRIWSPPCSGHRLLRLLRRRRLFVYSATELGSPS 131
>04_03_0542 +
16940464-16940527,16941906-16942101,16942204-16942365,
16942721-16942802,16942873-16943139,16943285-16943416
Length = 300
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 271 PNTYAYTKALAENLVAEEHGEXXXXXXXXXXXXXXXEEPVRGFVD 405
PNTY TKA+ E L+ + G+ ++P+ G+++
Sbjct: 94 PNTYVLTKAMGEMLLRQLGGDLPVVIVRPSIITSTFQDPMPGWIE 138
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 27.1 bits (57), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 276 HICIHKSAGRKLSC 317
H+C HK+ G KL+C
Sbjct: 98 HLCTHKATGEKLAC 111
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 27.1 bits (57), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 276 HICIHKSAGRKLSC 317
H+C HK+ G KL+C
Sbjct: 98 HLCTHKATGEKLAC 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,189
Number of Sequences: 37544
Number of extensions: 186030
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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