Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0475
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 49 1e-06
SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_10477| Best HMM Match : DUF602 (HMM E-Value=1) 28 3.9
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 27 6.9
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1) 27 6.9
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.1
SB_38646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_12860| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.2e-34) 27 9.1
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 49.2 bits (112), Expect = 1e-06
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Frame = +1
Query: 109 FVYVSTAYSNTSQSILEEKLYPQSLNLNEIQKFAEEHYILGKDNDEMIK-----FIGNHP 273
FV+VS+ Y+N + +++EK+YP S+ E +K L +D+M+K I P
Sbjct: 131 FVHVSSTYANCDRDVVDEKIYPPSI---EPEKLISS---LEWMSDDMVKAITPYVIDQRP 184
Query: 274 NTYAYTKALAENLVAEE 324
NTY +TK+LAE+++ +E
Sbjct: 185 NTYTFTKSLAEHVLLQE 201
>SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 136 NTSQSILEEKLYPQSLNLNEIQKFAEEHYILGKDNDEMIKF-IGNHPNTYAYTKALAENL 312
N S +LEE LNL ++K EE L N+E+ ++ + P A A+ N
Sbjct: 38 NDSTDLLEEF----QLNLESVKKLQEEQENLMLQNEEIARYNLSLQPKLEACKDAIIRNE 93
Query: 313 VAEE 324
+A+E
Sbjct: 94 IADE 97
>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 184 NLNEIQKFAEEHYILGKDNDEMIKFIGNHP----NTYAYTKALAENLVAEEH 327
N + + K H + K+N + K NHP N A TKA LV E++
Sbjct: 271 NNSTVTKAFNNHLVREKNNSTVTKASNNHPVREKNNSAITKAFYNRLVREKN 322
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 223 ILGKDNDEMIKFIGNHPNTYA-YTKALAE 306
++G++ D + + +H NTY YT A+AE
Sbjct: 594 LIGREKDTITILLADHGNTYTRYTSAIAE 622
>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 223 ILGKDNDEMIKFIGNHPNTYA-YTKALAE 306
++G++ D + + +H NTY YT A+AE
Sbjct: 1288 LIGREKDTITILLADHGNTYTRYTSAIAE 1316
>SB_10477| Best HMM Match : DUF602 (HMM E-Value=1)
Length = 429
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 133 SNTSQSIL-EEKLYPQSLNLNEIQKFAEEHY 222
++ QSI E+KL P++LNL+++ K E Y
Sbjct: 277 TDLEQSIKSEDKLSPETLNLSDVSKVLREKY 307
>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
Length = 1709
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 368 VIIEGLMIIVGISPCSSATKFSASAFVYAYVFGWLPINFIISSLSLPN 225
+ + L+ PCS+ T+ +F V G LP+ F I+ + PN
Sbjct: 1528 IYLTRLLATKDFQPCSAKTRRVIPSFTVWRVRGRLPLRFWINIVKNPN 1575
>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
Length = 638
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 369 CNNRRPNDNCWYFTVFFSN*VFCQRFCVCICV 274
C + D C+ F+ +FC + C+CI V
Sbjct: 401 CQRTQRLDVCYGDNHHFTTRIFCLKICICISV 432
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 399 RG*LEWCNCYGSIC 440
RG EW CYGS C
Sbjct: 296 RGEFEWMQCYGSYC 309
>SB_38646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 51 LECTMKVLETR*RNEKLSDVRICV 122
+ECT KVL+TR R EK + +CV
Sbjct: 184 VECTKKVLQTRERIEK--GIHLCV 205
>SB_12860| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.2e-34)
Length = 337
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 399 RG*LEWCNCYGSIC 440
RG EW CYGS C
Sbjct: 296 RGEFEWMQCYGSYC 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,305
Number of Sequences: 59808
Number of extensions: 240597
Number of successful extensions: 546
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -