Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0475
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    51   4e-07
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    29   1.5  
AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical ...    28   2.6  
AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical ...    27   6.0  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    27   8.0  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
 Frame = +1

Query: 79  LVKEMKNLAMFVYVSTAYSNTSQSILEEKLYPQSLNLNEIQKFAEEHYILGKDNDEMI-- 252
           L  ++K+L + V+VSTAY+N  +    EK+Y   +     QK  +    +  +    I  
Sbjct: 139 LCHQIKDLKVLVHVSTAYANCDRFETTEKIYKSPM---APQKLVDALSWMDDETLTKITP 195

Query: 253 KFIGNHPNTYAYTKALAENLVAEEHGEXXXXXXXXXXXXXXXEEPVRGFVDSWSGATAMA 432
           K +G  PNTY  TKALAE+ +  E  +               + P+ G+ D+ +G T + 
Sbjct: 196 KILGLRPNTYTLTKALAESTIETEAKDIPVIIIRPSIVGAMWQGPLPGWTDNINGPTGIF 255

Query: 433 A 435
           A
Sbjct: 256 A 256


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 342 CWYFTVFFSN*VFCQRFCVCIC 277
           CW+   FF   +FC    +C+C
Sbjct: 54  CWWLICFFGTFLFCWPILICLC 75


>AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical
           protein C33C12.5 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 425 AVAPLQLSTNPRTGSSALAVIIEGLMIIVGISPC 324
           A  P   +T P +G+S LA +  GL+I+   SPC
Sbjct: 62  APVPTTTTTEP-SGASQLAALSSGLLILEEASPC 94


>AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical
           protein C39B5.5 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 438 KCCHSSCTTPTIHEPSHWLFSTRCNNRRPNDNCWYFTVF 322
           KC  S   T +I +     FST C+   P  NC+ FT F
Sbjct: 200 KCFKSRIPTMSISKT----FSTNCSEVGPQSNCFGFTSF 234


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 214 EHY-ILGKDNDEMIKFIGNHPNTYAYTKALAENLVAEEHGE 333
           EH  IL +  D+ +K +GNH          A+ LV E H E
Sbjct: 199 EHVEILQRKFDDFLKELGNHQYRINEINQAADKLVEEGHSE 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,833,164
Number of Sequences: 27780
Number of extensions: 193075
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)