Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0474
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    71   1e-13
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    33   0.029
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    30   0.27 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   1.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   1.5  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   1.5  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    27   1.9  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    27   2.6  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.6  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   2.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    25   7.8  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   7.8  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +2

Query: 251 TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 427
           T   S+  NR  ++   + FL G ++ YV+ MY+AW  DPNSVHASW A+F+N    G  
Sbjct: 28  TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87

Query: 428 PGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAG 538
           P  A+  PP L  Y  +   L S + +      I  G
Sbjct: 88  PSKAFQAPP-LLDYADSYTALDSSLINGNNYADIDVG 123


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 5/130 (3%)
 Frame = +2

Query: 188 FNISKSGQSERFASWLLNKPQTAAVSVNA--NRLKSSTAAEPFLNGSSSAYVETMYNAWL 361
           FN+ K+   E   +  ++KP +   + N   N L+ + A       S SA      N  +
Sbjct: 514 FNVFKNVGEEHQGAEQIDKPFSCPPTWNTGPNSLQQTIANSRPEGNSGSAKKAAAANPMI 573

Query: 362 AD---PNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSIS 532
                PNS   S    +   T    P   Y P P   PY +N    TS+ PS  G P+  
Sbjct: 574 PSIVLPNSAMPSAMPMYPTPTMPYIP-VGY-PVPGYTPYMRNPSQHTSVAPSPNGTPTSG 631

Query: 533 AGSPINEKII 562
             S +   +I
Sbjct: 632 NSSTVGSPMI 641


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 425  QPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 547
            QP +A+ P   P LAP N+N    +++ P+ G M S  +   +
Sbjct: 1733 QPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAV 1775


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 242 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATN 418
           KP  + +  N N +   +  +   NG++S+ V    Y    ++  S       F    T 
Sbjct: 360 KPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQ 417

Query: 419 GAQPGAAYTPPPNLAPYNK 475
           GA P   Y PPP + P  K
Sbjct: 418 GAPPSHTYGPPPPVQPKPK 436


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 416 NGAQPGAAYTPPPNLAPYNKNEVPLTSLV---PSSGGMPSIS 532
           +GAQ G+   PP  L P+N ++    +L    PS   +P +S
Sbjct: 493 DGAQSGSPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVS 534


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 404 RNATNGAQPGAAYTPPPN---LAPYNKNEVPLTSLVPSSGGMPSISAGSPIN 550
           R  T+ + P +A +P PN     P  K E P +++  S+    +++A +P N
Sbjct: 74  RPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSN 125


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 419 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 514
           G   G+ Y PPPN+    K++  L+ L  SSG
Sbjct: 67  GRPIGSVYVPPPNVKNEEKDDA-LSKLAASSG 97


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +2

Query: 176 ARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNA 355
           A  + N+  S   E+  S      Q     VN N    S  AEP  NGS++A      N 
Sbjct: 183 ADTMLNLESSENREQPTSLKEENTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNY 242

Query: 356 WLADPNSVHAS 388
              +P   H++
Sbjct: 243 LPTNPTLTHSN 253


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 305 PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNE 481
           P  N + SA +  +    ++D PN  H   DAF ++ +   QP +A   P  L+ ++   
Sbjct: 9   PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSA-VEPLGLS-FSPGY 66

Query: 482 VPLTSLVPSSGGMPSISAGSPI 547
           +  +S  P  G + S S+  P+
Sbjct: 67  ISPSSQSPHHGPVRSPSSRKPL 88


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 320 SSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSL 499
           SS  +VET Y    A+PNS+   +D     ++NG     AY   P     ++ +    S 
Sbjct: 118 SSPFFVETQYAYQKANPNSIAFLYD--LSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASS 175

Query: 500 VPSSGGMPS 526
           + S    PS
Sbjct: 176 LNSHNLTPS 184


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = +2

Query: 194 ISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPN 373
           +S S Q    +S  L    +A ++ +++   +S+++   L+ SSS+ V +  ++ ++  +
Sbjct: 84  VSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSS 143

Query: 374 SVHAS 388
             H+S
Sbjct: 144 LSHSS 148


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 449 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 547
           PP+ AP +    P T+ V  + G+P  + G+ I
Sbjct: 71  PPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANI 103


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 300 AAVELFSLLAFTETAAVCGLFRSHDANLSLWPD 202
           AAV+L  L       A+C L R  D  +S + D
Sbjct: 146 AAVDLCKLAGLPPVGAICELVREEDGLMSRFDD 178


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 214 TLARFRDVKHYPCSMHDCCLL*PPGVSDL*HCS 116
           TL R  D   +  S   C +   PGVSD  +CS
Sbjct: 41  TLVRICDECAFGSSQDRCIICGAPGVSDCYYCS 73


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 407 NATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 559
           NATNG       TP P   P    +V   +  PS+  +PS S+    NEK+
Sbjct: 370 NATNGTSQSNISTPLPEPTPGQPRKVSGHN-PPSARRLPSASS-VKFNEKL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,510
Number of Sequences: 5004
Number of extensions: 48321
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)